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Daniel K. Masiga* and Raphael D. Isokpehi
Abstract: Genome science is a new type of biology that unites genetics, molecular biology, computational biology and bioinformatics. The availability of the human genome sequence, as well as the genome sequences of several other organisms relevant to health, agriculture and the environment in Africa necessitates the development and delivery of several types and levels of training that will enhance the use of genome data and the associated computational resources. A survey of initiatives that provide opportunities for training in genome science is presented. Current efforts to increase the ability of African scientists to computationally process and analyse genomic and post-genomic data have the potential to produce excellent scientists who perform cutting-edge, hypothesis-based research, and who will accelerate the continent’s scientific and technological development.[...] Read More.
Keywords: Bioinformatics, computational biology, genome science, networking.
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文章
S. Parvez*, Z. Mukhtar, F. Rashid, M.I. Rajoka
Abstract: A β-glucosidase genomic DNA from Cellulomonas biazotea NIAB 442 was isolated and coated onto tungsten microprojectiles for direct transformation of the gene into Saccharomyces cerevisiae. Transformation of β-glucosidase into S. cerevisae conferred the ability to hydrolyse esculin and cellobiose, indicating that the gene is expressed in the bombarded yeast.[...] Read More.
Keywords: Biolistic transformation, β-glucosidase, Cellulomonas biazotea, Saccharomyces cerevisiae.
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Thereza Christina Vessoni Penna*, Marina Ishii, Luciana Cambricoli de Souza , Olivia Cholewa
Abstract: The recombinant green fluorescent protein (GFPuv) was expressed by transformed cells of Escherichia coli DH5-α grown in LB/amp broth at 37oC, for 8 h and 24 h. To evaluate the effectiveness of different parameters to improve the expression of GFPuv by E. coli, four variable culturing conditions were set up for assays by a fractional factorial (24-1) design at two levels: (i) the effect of storing (24-48 h) the seeded broth at 4oC prior to incubation at 37oC; (ii) the effect of agitation speed (100-200 rpm); (iii) the final concentration (0.05-0.5 mM) of IPTG (isopropyl–β-D-thiogalactopyranoside) and (iv) the addition of IPTG at set cell densities (OD660 0.01-0.8). GFPuv was extracted from cells by the three phase partitioning method (TPP) and further purified with a methyl HIC column. The cultures grown at 37oC/24 h provided the highest yields of GFPuv under the conditions: (i) pre-storage at 4oC/24 h; (ii) agitation speed at 100 rpm; (iii) 0.5 mM IPTG and (iv) IPTG addition at OD660~0.01. On the other hand, at 37oC/ 8 h, GFPuv expression was dependent upon agitation of broth cultures at 200 rpm and the IPTG addition at the beginning of the growth exponential phase.[...] Read More.
Keywords: Green fluorescent protein (GFPuv), Escherichia coli DH5-α, growth kinetic parameters, expressed GFPuv kinetic parameters, three phase partitioning extraction (TPP).
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Iwalokun BA*, Olukosi YA, Adejoro A, Olaye JA, Fashade O
Abstract: In addition to inadequate understanding of swarming motility and virulence of Proteus, there is paucity of information on the relative effectiveness of the various anti-swarm agents. The anti-swarming effects of urea, sodium dodecylsulphate (SDS) and trihydroxymethylglycine (Tris) on 40 clinical isolates of Proteus Spp. were comparatively investigated and plasmids associated with swarming were characterized. The three substances elicited a comparable concentration-dependent anti-swarming property at 0.25 – 1.25% on nutrient agar. Anti-swarm agents displayed heterogeneity in their ability to cause significant decreases in the expression of virulence factors. Swarm motility was further found to be strongly associated with the expression of virulence factors in these strains. Of the Proteus strains tested, 32 were found to harbour 1 – 4 plasmids of size ranging from 6.0 – 33.5 kb. Plasmid curing resulted in loss of swarming in 65.6% of these strains. In order to reduce the risk of infection with virulent Proteus strains, the laboratory use of urea and SDS is suggested.[...] Read More.
Keywords: Proteus, swarming, urea, SDS, Tris.
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Bruno Oury, Vincent Jamonneau, Michel Tibayrenc, Philippe Truc*
Abstract: Trypanosoma brucei gambiense was isolated twice from each of 23 patients in Côte d’Ivoire. Genetic characterization using RAPD (Random Primed Amplified Polymorphic DNA) showed additional variability within a given isoenzyme profile (zymodeme), confirming that this fingerprinting method has a higher discriminative power (faster molecular clock) than isoenzymes. RAPD confirmed also the evidence of multiple infections by different genotypes in the same patient despite a low genetic variability among Trypanosoma brucei gambiense stocks. The involvement of this phenomenon in treatment failure is discussed.[...] Read More.
Keywords: Human African Trypanosomiasis, Trypanosoma brucei gambiense, RAPD, multiple infections.
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M. G. Abubakar*, A. Taylor and G. A. Ferns
Abstract: This in vivo study was designed to investigate the potential of aluminium (Al), in the absence of added iron, to participate in either antioxidant or pro-oxidant events. Some markers of oxidative stress were determined in liver and brain of rats exposed to aluminium lactate, either alone or in the presence of dietary supplements of selenium (se) as selenite. Exposure to aluminium for 21 days resulted in a statistically significant (P0.05) was observed in the GSH content. Contrary to what is known, Al exposure resulted in statistically significant decrease (P[...] Read More.
Keywords: Aluminium, selenium, rat, brain, liver, antioxidant enzymes.
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Anakalo Shitandi* and Gathoni Kihumbu
Abstract: In Kenya there is currently no screening of antimicrobial drug residues in milk. This study evaluated the improved tube test as a possible screening method using seven representatives of the β-lactam antibiotics. The group comprises antimicrobials most frequently used to treat bacterial infections in dairy cows. Each antimicrobial was tested at five concentrations based on established codex alimentarius maximum residue limits (MRLs). Test parameters studied were practicability and limits of detection (LODs) compared to MRLs and repeatability. The LODs established using a logistic regression model were: penicillin G (2 µg /kg), ampicillin (2 µg /kg), amoxicillin (2 µg /kg), oxacillin (30 µg /kg), cefalexin(100 µg /kg), cephapirin(60 µg /kg) and ceftiofur(100 µg /kg) all within codex alimentarius MRLs. The cost per ten samples using the improved tube test was less than 1 USD compared with 5 USD for the Delvo test. The improved tube test is concluded to be an affordable method, which could be used for qualitative identification of residues in low-income countries dairies.[...] Read More.
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SOUHAILI Zineb, LAGZOULI Mohamed, FAID Mohamed*, FELLAT-ZERROUCK Khadija
Abstract: Different extracts from marine algae (Cystoseira tamaricifolia) were tested for their antimicrobial activities. These extracts were examined for their activities on growth of moulds and yeasts and mycotoxines formation by moulds. The Minimal Inhibitory Concentration (MIC) was determined in every case in terms of dilutions. A total inhibition (100%) was obtained with the ethanolic crude extract on all the fungal species at the concentration of 10%. The aqueous extract showed an activity only on some strains used while no activity was observed on yeasts and moulds for both methanolic and aqueous extract. The other extracts (chloroform, hexane and methanol) had no activity on the microbial growth. Mycotoxins formation in Aspergillus flavus was inhibited by the ethanolic extracts at the concentration of 5%.[...] Read More.
Keywords: Algae, antimicrobial, minimal inhibitory concentration, moulds.
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S.A. Bankole* and A.O. Joda
Abstract: Experiments were carried out to determine the potential of using the powder and essential oil from dried ground leaves of Cymbopogon citratus (lemon grass) to control storage deterioration and aflatoxin contamination of melon seeds (Colocynthis citrullus L.). Four mould species: Aspergillus flavus, A. niger, A. tamarii and Penicillium citrinum were inoculated in the form of conidia suspension (approx. 106 conidia per ml) unto shelled melon seeds. The powdered dry leaves and essential oil from lemon grass were mixed with the inoculated seeds at levels ranging from 1-10% (w/w) and 0.1 to 1%v/vt respectively. The ground leaves significantly reduced the extent of deterioration in melon seeds inoculat4ed with different fungi compared to the untreated inoculated seeds. The essential oil at 0.1 and 0.25% (v/w) and ground leaves at 10% (w/w) significantly reduced deterioration and aflatoxin production in shelled melon seeds inoculated with toxigenic A. flavus. At higher dosages (0.5 and 1.0% v/w), the essential completely prevented aflatoxin production. After 6 months in farmers’ stores, unshelled melon seeds treated with 0.5% (v/w) of essential oil and 10% (w/w) of powdered leaves of C. citratus had significantly lower proportion of visibly diseased seeds and Aspergillus spp infestation levels and significantly higher seed germination compared to the untreated seeds. The oil content, free fatty acid and peroxide values in seeds protected with essential oil after 6 months did not significantly differ from the values in seed before storage. The efficacy of the essential oil in preserving the quality of melon seeds in stores was statistically at par with that of fungicide (iprodione) treatment.[...] Read More.
Keywords: Aflatoxin, Cymbopogon citratus, essential oil, powdered leaves, melon seeds, mould deterioration, oil content, free fatty acid, peroxide values, seed germination.
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文章
Ilham Zerdani, Mohamed Faid* and Abderahim Malki
Abstract: Eight strains of Bacillus were isolated from non treated soil, characterized and used for the digestion of feather wastes in the laboratory. Non-protein nitrogen (NPN) and total protein (TP) were determined during the incubation time and the microbial counts of the different strains during feather hydrolysis were also monitored. Results of the screening test showed that the solid pieces of feather were completely digested by all the strains. The most efficient isolated strain selected was compared with Bacillus subtilis ATCC 6633. Results showed that the total protein decreased from 13.6% to 1.92 % with the isolated strain, and from 12.25 % to 2.99% with the standard strain. The NPN reached a concentration of 43.2mg/100g and 20.5 mg/100g with the isolated and standard strains, respectively.[...] Read More.
Keywords: Feather, keratin, Bacillus, fermentation, process.
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