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Advanced Journal of Microbiology Research

89 Articles | Volume 14 (2015)
Research Article
M. Y. Teweldemedhin* and Van H. D. Schalkwyk
Abstract: The objective of this paper is to analyse the international trade performance of the South African agricultural industry in aggregate and by product group categories. A useful tool in this regard is the Gini and intra-industrial trade coefficient (IIT), which is used to examine the international trade balance of South Africa. Moreover, Ordinary Least Squares (OLS) is also used to identify factors that may be necessary to achieve high IIT. The IIT coefficient, after 1994, achieved more than 85 percent, which is a record level even for industrialised countries. This high IIT performance reveals trade liberalisation between the Southern Africa Customs Union (SACU) and the European Union (EU), opening South Africa’s market to the world. It also reveals that South Africa is able to increase its specialisation and flexibility to gain market access, and has shown a greater ability to compete in a changing trade environment. The results of the econometric analysis of IIT determinants give a greater magnitude to the coefficients export to Gross Domestic Product (GDP) and export -to -import ratios. These results imply that if South Africa’s industries take measures to increase trade liberalisation, diversity, and the level of industrial specialisation, the IIT level would be higher, and significant economic gain might be achieved by minimising costs. Key word: Gini and intra-industrial trade coefficient, the international trade performance.[...] Read More.
Keywords: Gini and intra-industrial trade coefficient, the international trade performance.
  2015, 14(1), 1-6; 
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Research Article
Aggelopoulos S.*, Pavloudi A. and Galanopoulos K.
Abstract: This paper focused on the spatial and typological analysis of the economic activities of a major entrepreneurial sector of agricultural economy: pig farming. By applying the K-Mean Cluster analysis methodology, the “profile” of various pig farms was studied, regarding the geographical region, corporate structure, educational level of their owners and the type of invested capital. The K-Mean Cluster analysis results indicated that there were three clusters of farms that verified its criteria. The farms in first cluster were mainly active in the regions of Western Thessaly and the area of Evia-Viotia. The majority was family farms, which had not yet invested in the modernisation of their fixed assets, and this led to a high cost of use of the said assets. The farms in second cluster were active in the regions of Central Thessaly, Attica and Viotia. They were shareholder enterprises, and attained the best financial results compared to the other clusters. These farms combined a high productivity rate with investments in a more rational exploitation of their fixed assets. The farms in third cluster were active in Eastern Thessaly, Etoloakarnania, Attica and Viotia, and were also shareholder enterprises. They presented a high rate of modernisation, but still required investments of a higher quality in order to improve their performance.[...] Read More.
Keywords: Pig farms, agricultural investments, financing, K-mean cluster analysis.
  2015, 14(1), 1-6; 
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Review
F. I. Kabuya
Abstract: Most sub-Saharan African leaders seem to misunderstand the development concepts or ideas by embracing the African socialist system as a path of economic development. The leaders focused on strong nationalist sentiments and economy of affection and neglected the rural development, a sine qua none condition of economic growth and development in Africa. This study defines the development concepts and different economic systems, analyzes the relationship between governance, leadership and development, describes the common characteristics of African economies, and puts forward a view on the developmental policies that might address the development challenges of the region. African policy makers should recognize the failed policies of the past and be attentive to agricultural and rural development ideas in their economic development process.[...] Read More.
Keywords: Development, economic growth, governance, leadership, agriculture, pro-poor policies.
  2015, 14(1), 1-6; 
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Research Article
Vandana Gupta*, R. K. Mittal and V. K. Bhalla
Abstract: The objective of this paper is to critically examine the role of credit rating agencies in the sub-prime crisis. The paper traces the development of the sub- prime crisis from its origin till the aftermath. It studies the weaknesses of credit rating agencies in performing their basic function of timely and accurate rating of bond obligations. The paper then scrutinizes the diversification of credit rating agencies into the structuring and rating of complex securitized products. This raises fundamental issue of the independence and accountability of these agencies. The paper comes to the conclusion that appropriate changes in the regulatory framework of credit rating agencies are necessary to help avert similar crises in the future.[...] Read More.
Keywords: Crisis, sub-prime, mortgage, credit ratings, default, global markets, accountability, regulation.
  2015, 14(1), 1-6; 
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Views:468
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Research Article
V. M. Mmbengwa* T. Ramukumba¹, J. A. Groenewald, H. D. van Schalkwyk, M. B. Gundidza and A. N. Maiwashe
Abstract: In order to establish reasons for their success and failure (defining failure as incapability to meet financial obligations, e.g. defaults), a study was undertaken to determine the problems faced by emerging or developing farmers, who are clients of, or are /funded by the Land Bank. Results from this study revealed that the farmers’ perceptions do depict a lack of capacity on essential prerequisites for their businesses, especially, their perception on the value of extension support and business plans. The objective analysis of farm profitability shows that emerging farmers are unable to accurately identify factors that influence their success and failure. Extension support, sole proprietorship and business plans were found to be crucial for the farming supported farming small, micro and medium enterprises (SMMEs) to succeed and be profitable. It is therefore essential that agricultural stakeholders ensure that farming SMMEs have adequate support regarding the identified factors that may potentially influence profit and loan repayments, as these factors are crucial for the success of these enterprises.[...] Read More.
Keywords: Success, failure, farming supported farming small, micro and medium enterprises (SMMEs), profitability, emerging farmers.
  2015, 14(1), 1-6; 
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Research Article
Nicholas N. Ngepah
Abstract: The aim of this study was to investigate the poverty reduction impact of various potential biofuel crops in South Africa. A simple pro-poor development framework (in which income is substituted for by its function) is specified. After analysis for outliers with considerable leverage, a robust regression option was used to carry out estimations for physical output, values and inputs of each crop. For reasons of data availability, the crops considered were maize, wheat, sorghum and sugarcane for bioethanol, and groundnuts, soybeans and sunflower for biodiesel. The results suggest that various crops have different impacts on the different poverty measures. If a biofuel strategy’s intent is to promote (income) poverty reduction, then for South Africa sugarcane should be prioritised for bioethanol and groundnut for biodiesel. Other crops like maize and sunflower would require stronger support to small farmers. The finding also suggests that poverty reduction comes mainly by employment of the poor in commercial farming. There is suggestion that investment in farming by the poor is often inadequate and would generally result to poverty exacerbation. The implication is that the capital base of the poor must be broadened for them to effectively participate in farming. This has to be done without stifling commercial farming which is simultaneously contributing to poverty reduction through employment. These recommendations hold for sugarcane, groundnut and maize. However, a weakness worth mentioning is that the data is likely to underestimate or completely ignore most of the subsistence producers whose production is mainly for own consumption. Therefore, poverty impact could equally experience a downward bias in the models estimated here.[...] Read More.
Keywords: Biofuel crops, comparative analysis, poverty effect, South Africa.
  2015, 14(1), 1-6; 
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Research Article
V. Abankwah*, R. Aidoo and B. Tweneboah-Koduah
Abstract: The study was conducted in the Kumasi metropolis of the Ashanti region of Ghana to examine the margins and economic viability of fresh coconut marketing. Cross-sectional data was randomly collected from 120 individual fresh coconut marketers in market centers across the metropolis and analyzed, using Deconstructed Marketing Margins and Return on Capital Employed. The study revealed that fresh coconut marketing in the Kumasi metropolis is a viable venture that employs people within the economically active age group. Actors in the market have very low educational background with some having no formal education. It has been identified as a safe net for school drop outs, proving meaningful employment for them. Fresh coconut marketing has been found as a lucrative venture to economically empower both men and women to improve their livelihoods. With a minimum of GH₡18.00, as a start-up capital, one can enter into this venture and receive proportionate returns. Actors in the market receive rates of returns several times higher than fixed-deposit interest rate in the Ghanaian economy because they can turn over their relatively low capital several times in the year to accrue more profit. Retailing, though needs a very small start-up capital, is the most profitable level along the distribution channel. Transporting and distributing fresh coconut from the production centre to the consumer market is more profitable than rationing them to retailers and wholesalers in the marketplace.[...] Read More.
Keywords: Economic viability, deconstructed market margin, sedentary wholesaler, itinerant wholesaler.
  2015, 14(1), 1-6; 
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Research Article
U. C. Ibekwe and O. M. Adesope*
Abstract: The study focused on the costs and returns of small- scale vegetable production in Owerri West Local Government Area of Imo State, Nigeria. A total of 150 respondents were interviewed using questionnaire. The production system and socio economic characteristics of the farmers were evaluated. Vegetable production was found to be profitable with a Benefit – Cost Ratio (BCR) of 1.64 and the return per capital invested was found to be 0.50k. The regression analysis showed that variables such as, cost of labour, cost of fertilizer, cost of planting materials, cost of irrigation, level of education, size of household, farming experience and farm size were significant at five percent level of significance. Formation of cooperative society by farmers’ provision of appropriate planting materials and technologies were the methods recommended for amelioration of vegetable farmers’ problem.[...] Read More.
Keywords: Dry season, vegetable production.
  2015, 14(1), 1-6; 
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Research Article
Wautabouna Ouattara
Abstract: This study investigates the determinant factors of economic efficiency in Cote d’Ivoire. We estimated a stochastic production frontier by the maximum likelihood method. For a deeper analysis, we considered a cost frontier and compared the scores of efficiency for each industrial sector. The findings of an investigation of about 3,000 firms observed from 2003 - 2006 reveal that the Ivorian economy is not economically efficient as a consequence of the ensuing: socio-political instabilities; outside debt burden; unemployment rate; and weakness in savings on organizational productivity. Therefore, this study recommends a permanent mechanism of supervision for economic efficiency indicators; promotion of a factual and evocative employment policy for the youth; and the enforcement of granting financial aid to enterprises to assist them in having high added value to improve organizational productivity.[...] Read More.
Keywords: Economic efficiency, technical efficiency, allocative efficiency, productivity, profit.
  2015, 14(1), 1-6; 
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Research Article
Samuel K. N. Dadzie* and Isaac Dasmani
Abstract: Gender mainstreaming has, for some time now, been identified as a paramount issue in development of resource-poor societies, and particularly, the women whose access to productive resources is limited due to tradition, culture and other socio-economic constraints. This research paper investigates the influence of Gender in management on the level of efficiency of food crop farms in Ghana. The study specifically: compares the technical efficiency scores of farms with male entrepreneurs and those with female entrepreneurs; examines the determinants of technical efficiency of food crop farmers; and compares technological gaps of farms with male entrepreneurs and those with female entrepreneur. The study involved 90 male food crop farmers and 90 female food crop farmers in the Juaboso District in the Western Region of Ghana. The respondents interviewed were selected using stratified random sampling technique. Stochastic metafrontier production function was used to estimate the efficiency scores in each group and multiple regression models was estimated to verify the determinants of technical efficiency. Survey was conducted with structured interview schedules to collect data. The estimated technical efficiencies indicate that food crop farmers in the Juaboso District of Ghana are, in general, less efficient in their production. Although farms under male farmers management had higher mean value of production figures relative to the female farmers’ farms, the farms under female farmers management were found to be more efficient and also nearer to the potential output defined by the metafrontier production function compared to the farms owned by males. We also found technical efficiency to be influenced significantly by gender, age, household size, years of farming experience, access to credit, education and consultation with extension staff.[...] Read More.
Keywords: Gender of farmers, metafrontier, food crop production.
  2015, 14(1), 1-6; 
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Research Article
M. A. Badmus
Abstract: This study examined the impact of market liberalization on maize production in Nigeria. Time series data for a 29-year period (1970 - 1998) were collected. Zellner’s seemingly unrelated regression (SUR) model was used as the estimation technique. Output of maize was found to be more during liberalization. Fertilizer price and hectarage planted to maize were the significant variables affecting maize output. Fertilizer consumption was found to be affected by hectarage planted to maize and crop loan. Retail price of fertilizer was determined by the factory gate and world prices of fertilizer. For hectarage planed to maize, crop loan, government expenditure, and the relative price of maize to millet, were the significant explanatory variables. For output of maize and hectarage planted to maize, the dummy variable (0, for pre-liberalization and 1 for liberalized period) were significant. This means that market liberalization did affect these variables. However for fertilizer consumption and fertilizer price, the dummy variables were non-significant and this implied that market liberalization had no impact on fertilizer consumption and fertilizer price. Conclusion is that market liberalization if properly implemented had a positive impact on maize production in the country.[...] Read More.
Keywords: Market liberalization, maize production, Nigeria.
  2015, 14(1), 1-6; 
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Research Article
Mohammad Abdul Malek* and Koichi Usami
Abstract: Given the critical importance of the non-farm sector in rural Bangladesh, this paper examines the comprehensive effects of non- farm incomes on poverty reduction, namely, household production and consumption. The study was based on the original field survey with data from about 175 small households in advanced villages of Bangladesh. Standard micro-econometric techniques were used for the empirical analyses. The study found that the small households in advanced villages were in a stage that their non-farm incomes did not contribute significantly to their household production for either farm or non-farm and food consumption (calorie adequacy); and accordingly, these could be spent on non-food consumption. Finally, the study found that the overall non-farm income significantly mattered for reducing income poverty but could be still low to be realized in reducing education poverty. However, among the non-farm income components, while out-country remittance and non- farm self-employment incomes were more income poverty (incidence and gap) reducing compared to non-farm wage and in-country remittance incomes, the remittance incomes (both in-country and out-country) were reducing the severity of education poverty. Thus, the qualitative diversification of the small household workers and productive use (preferably in farm/non-farm production and demand driven education) of non-farm incomes deserved special attention.[...] Read More.
Keywords: Non- farm incomes, household economy, calorie adequacy, income poverty, education poverty, advanced villages, instrumental variable.
  2015, 14(1), 1-6; 
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Research Article
Behzad Sani* and Hossein Aliabadi Farahani
Abstract: Iran is one of the largest Asian countries with arid and semi-arid weather, but can produce most food crops due to special geographical position. In order to determine seasonal prices (SPV) variations in some food crops, this study was carried out at Karaj city of Iran in 2009. In this experiment, four groups of food products were used. The first group includes tree fruits (orange, apple and pomegranate), the second includes the kitchen garden fruits (watermelon, melon and cantaloupe), the third includes greenhouse fruits (banana, strawberry and pineapple) and the fourth group includes vegetables (tomato, potato and onion). Each of the above products price was determined in each season (spring, summer, autumn and winter) and were compared with one another by statistical graphs. The results showed that price variations were high in tree fruits, vegetables and kitchen garden fruits than the greenhouse fruits and demand of these products was very dependent on price variations. In the seasons, increase in product demand results to decrease in product price, while reduction in the product’s demand results to increase in product price; but greenhouse fruits prices were constant during the year and there were also constant demand for these products in all seasons. The results showed that the greenhouses production and processing food products can keep constant prices of food products throughout the year and remove the destructive role of brokers.[...] Read More.
Keywords: Seasonal price variations, food crops, sustainable agriculture.
  2015, 14(1), 1-6; 
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Research Article
Tomoaki Nakatani* and Kazuo Sato
Abstract: The aim of this paper is to extend the truncated and endogenously stratified Poisson and negative binomial models to three alternative discrete distributions, namely the generalized Poisson, geometric and Borel distributions. Our primary intention here is to demonstrate how the improper treatments of the data generate divergent outcomes by applying those results to the recreation trip data surveyed from the visitors to an indigenous horse park in Japan. Our empirical application shows that failure to account for overdispersion, truncation and endogenous stratification leads to substantial changes in parameter estimates and their standard errors. The parameter on the travel cost tends to be underestimated in absolute value in the standard setups. This induces serious overestimation of the economic benefit that the recreation site offers to the society. Even when the endogenous stratification is incorporated, ignoring the overdispersion estimates the per capita per trip consumer surplus over 7 times larger than the one obtained under the endogenous stratification and overdispersion.[...] Read More.
Keywords: Count data models, endogenous stratification, overdispersion, recreation demand analysis, consumer surplus.
  2015, 14(1), 1-6; 
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Research Article
C. Parwada*, C. T. Gadzirayi, W. T. Muriritirwa and D. Mwenye
Abstract: The objectives of this study were to assess and compare the levels of adoption of agro-forestry technologies between trained and untrained farmers, and identify specific factors that affect adoption of technologies. Data from 300 smallholder farmers selected by snowballing from villages where change agents had been trained by the International Center for Research in Agro Forestry was collected using structured questionnaires. The data were analyzed using the Statistical Package for the Social Science and Microsoft Office Excel. The results showed that there was low level of awareness of agro-forestry technologies among farmers. Formally trained farmers adopted agro-forestry technologies more than informally- trained farmers. Logit regression results showed that the likelihood to adopt live fence was influenced significantly by land ownership, awareness, training, drought, labour and local institutions (p[...] Read More.
Keywords: Adoption, agro-forestry technologies, change agents, logit regression.
  2015, 14(1), 1-6; 
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Research Article
V. Shahabinejad* and A. Akbari
Abstract: In this paper the agricultural productivity growth in Developing Eight (D-8) from 1993 - 2007 is examined using the data envelopment analysis (DEA). The study focuses on growth in total factor productivity and its decomposition in to technical and efficiency change components. It was found that, during that period, total factor productivity has experienced a positive evolution in D-8. Decomposition of TFP shows that technical change is the main source of this growth. The study also describes that technical efficiency change has been the main constraint of achievement of high levels of total factor productivity. Also, findings in pure and scale efficiency change show that, the cause of the low efficiency is that, these countries have not succeeded well in expanding of agriculture sector of their economy. Finally it was found that, all D-8 countries improved technology more than efficiency in the reference period.[...] Read More.
Keywords: Total factor productivity (TFP), data envelopment analysis (DEA), developing Eight (D-8).
  2015, 14(1), 1-6; 
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Research Article
A. A. Ammani*, J. F. Alamu and T. M. Kudi
Abstract: The paper studies the effects of the liberalization of the Nigerian fertilizer sector, vis-à-vis the sustenance of the present dual fertilizer distribution arrangement, on maize production in Nigeria. Time series data was collected for the period 1990- 2006. A multiple regression model was specified with aggregate fertilizer use, maize hectarage and a dummy variable designed to capture the effects of the changes induced by fertilizer liberalization measure, as explanatory variables. Aggregate maize output was the dependent variable. Results of this study indicate that a significant decrease in aggregate maize production followed the Federal Government’s liberalization of the fertilizer sector in 1997. The statistically significant decrease in Maize production is attributable to the statistically significant decrease in fertilizer use during the fertilizer liberalization period. The paper concluded that the sustenance of the present dual fertilizer distribution arrangement has a negative effect on maize production in Nigeria.[...] Read More.
Keywords: Effects, fertilizer liberalization, maize production, Nigeria.
  2015, 14(1), 1-6; 
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Research Article
The real exchange rate and growth in Malawi: Exploring the transmission route
Abstract: This study focuses on the impact of real exchange rate on savings rate and economic growth. It further explores the savings transmission mechanism through which such a link can take place in the country. The results show that real effective exchange rate (REER) volatility has adverse effects on economic performance. Contextually, an appreciated REER is significantly and positively correlated with economic growth, reflecting Malawi’s net-importer position. On the other hand, REER volatility is significantly and negatively correlated with growth, reflecting investors’ preference for a stable exchange rate. With regard to savings, the study finds that appreciation of the REER (or nominal exchange rate) would encourage savings. The study also finds that devaluation of the REER has an insignificant effect on economic growth in the long-run. The negative impact of real exchange rate volatility on economic growth suggests that eliminating real exchange rate volatility can have strong growth-enhancing effects. Government has a variety of instruments at their disposal to influence the level, and reduce the volatility of the real exchange rate. The options include currency intervention (building up foreign exchange reserves) and eliminating institutional and market failures.[...] Read More.
Keywords: Malawi, real exchange rate, economic growth, transmission route.
  2015, 14(1), 1-6; 
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Research Article
Latif Dramani
Abstract: Using the convergence theory inspired by models of endogenous growth, this paper analysed convergence in the economies of the Franc Zone countries in Africa. With an econometric validation based on cross-sectional and panel data, the paper tested a number of hypotheses, the main ones being the convergence of the economies of the UEMOA and CEMAC zones through per capita income, the existence of spillover effects, as well as the search for a common growth path for the economies of the two zones. The study’s findings show that the convergence process, and hence that of integration has not been carried out uniformly in the Franc Zone: the process has been given greater emphasis in UEMOA than in CEMAC. Further, the conditional convergence model highlights the existence of key variables that help to maximize the convergence speed. A more refined convergence approach, which used similarities related to production factors and those related to natural advantages highlight the presence of a convergence club. The study found a period-related convergence in the cotton-producing countries, coffee-producing countries and coastal countries. This shows that the hypothesis of a common convergence path in the Franc Zone has not been borne out by our study.[...] Read More.
Keywords: Beta convergence, stochastic convergence, panel data, cointegration, economic integration.
  2015, 14(1), 1-6; 
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Research Article
Fekadu Gelaw
Abstract: The Ethiopian government has boldly set very rapid and sustainable growth and its equitable distribution as its prime development objective to end poverty in the foreseeable future. For this reason, promoting agricultural and rural development has been purported by the government as its top development agenda since it took power some 19 years back. Yet the extent to which the government realizes this objective remains in doubt. This paper attempts to analyze the dynamic relationships among poverty, inequality and growth. While many of the available studies use aggregate cross-country data sets, this study, however, uses household panel data-set. The decomposition result indicates that the observed growth was neither rapid nor sustainable. Poverty and inequality have not also declined considerably except between 1995 and 1997. The study also systematically generated 90 observations of indices from the five rounds to estimate Fixed Effect (FE) regression model. The estimated growth and inequality elasticities of poverty were found equal to 3.32 and -3.68, respectively. What this means is that poverty could still remain high if the country fails to achieve rapid and sustainable growth, on the one hand, and simultaneously reduce inequality, on the other.[...] Read More.
Keywords: Inequality, poverty, growth, fixed effects.
  2015, 14(1), 1-6; 
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Views:546
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Research Article
M. Y. Teweldemedhin* and H. D. Van Schalkwyk
Abstract: The aim of this study was to measure the impact of liberalisation on the South African agricultural economy, particularly the impact on trade flow of the exchange rate, trade liberalisation and distance of trading partners using the gravity model. The model found that all variables were significant at one percent and carried the expected sign. Only the EU dummy variable had an inverse relationship, implying that the EU trade agreement has a negative impact on the export capacity of the South African farmers. This result has important policy implications for the South African agricultural sector in selecting and strengthens the regional block agreement. Given the importance of distance to markets, South Africa should emphasise efforts to reduce transaction costs. It is also important to protect and advocate productivity growth within the era of globalisation challenges Secondly, from an export promotion standpoint, distance in the model result showed that per capita income in importing countries is elastic and significant when it comes to determining exports. Therefore, it is important for South Africa to revise all the existing trade links and extend further to countries or regions with a high per capita income in order to realise export potential.[...] Read More.
Keywords: Trade liberalisation, distance of trading partners, gravity model.
  2015, 14(1), 1-6; 
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Research Article
Francisca Nwaokorie*, Akitoye Coker, Folasade Ogunsola, Elerson Gaetti-Jardim Jr., Oyedele Gabriel, Ayanbadejo Patricia, Abdurrazaq Taiwo and
Abstract: The extracts from the root, bark and seed of Garcinia kola are currently used in traditional medicine in Nigeria. The aim of this study was to evaluate the inhibitory activity of crude extracts of G. kola on Fusobacterium nucleatum isolated from the oral cavity. Methanol and aqueous extracts were prepared from the seed and the minimal inhibitory concentration was evaluated by the agar dilution method, using a Wilkins-Chalgren agar supplemented with horse blood (5%), hemin (5 µg/ml) and menadione (1 µg/ml). Antimicrobial activity of plant extracts on microbial biofilms was determined in microtiter plates. The seed of G. kola demonstrated significant inhibitory action on F. nucleatum isolates at a concentration of 1.25 and 12.5 mg/ml for amoxicillin resistant strain. It was able to inhibit the microbial biofilm formed by the association of F. nucleatum with Porphyromonas gingivalis ATCC 33277, Aggregatibacter actinomycetemcomitans ATCC 33384 and Prevotella intermedia ATCC 2564 at a concentration of 25 mg/ml. The in-vitro inhibitory effect of G. kola on F. nucleatum population suggests a potential role for its use in oral hygiene.[...] Read More.
Keywords: Fusobacterium nucleatum, Garcinia kola, oral disease, natural medicine, anaerobic bacteria, biofilm.
  2015, 14(1), 1-6; 
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Research Article
Shao Hua, Chang Shenghe*, Li Zongwei, Wang Yanping and Qin Guangyong
Abstract: The radiation resistant bacterium Deinococcus radiodurans R1 possesses a high intracellular Mn/Fe concentration ratio. Non-enzymic Mn(II) in D. radiodurans acts as an antioxidant to scavenge reactive oxygen species which contributes to its extreme radioresistance. The gene dr2539 encodes a transcriptional regulator that is predicted to be involved in regulating the transportation of Mn(II) or Fe(II) in D. radiodurans R1. In this study, we constructed a dr2539 disruption mutant with D. radiodurans R1 and compared them in growth rates and in intracellular Fe and Mn ions concentrations. We also investigated the phenotypes of the two strains including protease secretion and resistance to heavy metal ions, H2O2 and MV. The results showed that D. radiodurans R1 did not exhibit strong resistance to Hg(II), Ag(I), Cr(VI) and Pb(IV). Disruption of the gene dr2539 in D. radiodurans R1 resulted in an obvious growth defect in Mn-depleted medium and a remarkably-increased sensitivity to Mn(II). The disruption mutant obviously accumulated the intracellular Mn ion and raised the intracellular Mn/Fe ratio in Mn(II)-replete medium, but it had the similar intracellular Mn/Fe ratio with the wild strain in Fe(II)-replete medium. Furthermore, although the mutant accumulated high levels of intracellular Mn/Fe ratio in Mn(II)-replete medium, disruption of the gene dr2539 had no apparent effect on its resistance to H2 O2 and MV. These results suggest that the gene dr2539 in D. radiodurans R1 plays an important role in regulating the transportation of Mn(II) and the correlation between the intracellular Mn/Fe ratio and the antioxidant capacity in D. radiodurans need further study.[...] Read More.
Keywords:
  2015, 14(1), 1-6; 
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Research Article
Daniel Solís*, Michael Thomas and David Letson
Abstract: In this study, we implement a set of probit models to analyze the determinants of household hurricane evacuation choice for a sample of 1,355 households in Florida. This article contributes to the literature by accounting for two issues normally neglected in previous studies; namely, regional variability and within season variability. The empirical results suggest that households living in risky environments (mobile home and flooding areas) are more likely to evacuate. In addition, households with children and those who have experienced the threat of a hurricane also display higher probabilities to evacuate. Opposite results are found for homeowners and households with pets. Regional differences are also clearly demonstrated with households in southeast Florida less likely to evacuate than those in Northwest Florida.[...] Read More.
Keywords: Hurricane, evacuation, household behavior.
  2015, 14(1), 1-6; 
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Research Article
H. Belguith*, F. Kthiri, A. Chati, A. Abu Sofah, J. Ben Hamida and A. Ladoulsi
Abstract: There has been a consistent increase in the search for alternative and efficient compound for food conservation, aiming a partial or total replacement of antimicrobial chemical additives. Garlic offers a promising alternative for food safety and bioconservation. Filter sterilized, aqueous garlic extract was tested for ability to inhibit the growth of some isolated Salmonella serovars. The aqueous garlic extract (A. G. E., 57.1% (w/v), containing 324 µg/ml allicin) inhibited the growth and killed most of the tested Salmonella serovars. The effect of bacteriostatic concentration of A. G. E. on the growth of the different tested serovars, revealed a pattern of inhibition characterized by: (i) a transitory inhibition phase whose duration was proportional to A. G. E concentration (ii) a resumed growth phase which showed a lower rate of growth than in uninhibited controls and (iii) an entry into stationary phase at a lower culture density. The minimal inhibitory concentration and minimum bactericidal concentrations were very close; garlic MIC range 10 - 12.5 mg/ml; MBC range 13 - 15 mg/ml. Garlic extract could be stored at 4°C because no detectable loss of antibacterial activity at this temperature over several days was observed. However, excessive warming, or longer periods at higher temperatures should be avoided. Among enzymatic activities followed with the API-ZYM system, significant changes during the inhibition phase were detected. These biochemical changes represent an adaptative response towards the garlic stress.[...] Read More.
Keywords: Allium sativum, allicin, garlic, antimicrobial, Salmonella.
  2015, 14(1), 1-6; 
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Review
Zhen Wang, Chun Yan Wang, Zhe Ming Fang, Dong Liang Zhang, Lei Liu, Mi Ra Lee, Zheng Li, Jing Jie Li and Chang Keun Sung*
Abstract: Pine wilt disease, caused by the pinewood nematode, Bursaphelenchus xylophilus, is the most serious disease of pine tree with great economic losses. So far it is not clear why the pine trees turn wilting, though several hypotheses about the pathogenic mechanism of pine wilt disease have been presented, such as phytotoxins causing death of pine trees; cellulases hydrolyzing celluloses of pine tree; terpenoids causing cavitation and water column breakage of pine tree, etc. Recently, it was found that certain bacteria, symbiotically associated with the pinewood nematode, may play some roles in the pathogenicity of the disease. Since the pine wilt disease is a complex interrelationships among beetle, pine tree, fungi, bacterium and nematode, all the pathogenic factors are not mutually exclusive, which means a variety of factors make pine tree for death, rather than a single factor. Pinewood nematode and bacteria produce phytotoxins and cellulases, which cause the defense of pine tree and stimulate the production of terpenoids to form cavitation, break water columns and finally make pine trees wilting. Pinewood nematode is involved in the production of phytotoxins, cellulases and terpenoids; therefore it is a vital and indispensable factor for pine wilting disease.[...] Read More.
Keywords: Pinewood nematode, Bursaphelenchus xylophilus, pathogenic mechanism, terpenoid, cavitation, cellulase, phytotoxin, bacteria.
  2015, 14(1), 1-6; 
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Research Article
Farzad Aala, Umi Kalsom Yusuf*, Alireza Khodavandi, and Farida Jamal
Abstract: Dermatophytes are fungi capable of invading keratinized tissues of humans and animals, causing dermatomycosis. Azole antifungal drugs are often used in the treatment of dermatomycosis. Because of increased use of these medications, azoles are known to cause drug resistance; hence this study investigated an alternative anti-dermatophyte which is plant-based, and biodegradable natural product. Allicin is a pure bioactive compound derived from garlic, which is known worldwide for its antifungal activities. This study evaluated the in vitro efficacy of pure allicin alone against six dermatophyte isolates and the MIC50 and MIC90 ranged from 0.098 – 25.0 µg/ml. Results of this study showed that the order of efficacy based on the MICs values was fluconazole > allicin > ketoconazole at 28ºC for both 7 and 10 days incubation. On the other side, most of tested drug combinations demonstrated synergistic or additive interaction for all isolates for both 7 and 10 days incubation at 28ºC. In conclusion allicin alone showed very good potential as an antifungal compound against mycoses-causing dermatophytes, performing better than the synthetic drug fluconazole, and almost the same as ketoconazole, furthermore allicin in combination with ketoconazole or with fluconazole frequently showed synergistic or additive interaction against dermatomycosis.[...] Read More.
Keywords: Allicin, antifungal drugs, dermatophytes, MIC (minimal inhibitory concentration).
  2015, 14(1), 1-6; 
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Research Article
 I. A. Adeoye, M. D. Dairo, L. V. Adekunle, H. O. Adedokun and J. Makanjuola
Abstract: The global burden of measles has remained a public health challenge. Worldwide, measles is the fifth leading cause of death among under-five children with an estimate of 197,000 deaths in 2007. In Nigeria, measles is an important cause of childhood morbidity and mortality. Measles outbreaks have been increasingly common in the country with 30, 194 and 256 outbreaks reported in 2006, 2007 and 2008 respectively. This paper describes the investigation, findings and mitigation efforts of a measles outbreak in Ogunmakin, a rural community in South-western Nigeria from 7th January to 15 th February 2009. The study design was descriptive and cross-sectional in nature. The investigation was multi-disciplinary in nature performed based on the national guidelines for investigating a measles outbreak. This involved data and blood sample collection from the initial cases, notification of the local government health authority, active search and line listing of cases from other health facilities. A household survey was conducted to find additional cases as well as to define the extent of the outbreak. Qualitative techniques were also employed to explore the issues associated with the uptake of immunization in the community. A total of 29 measles cases were identified, all were less than five years old. There were two deaths giving a case fatality rate of 6.9%. Majority of the cases (96.5%) were not immunized against measles. The epidemic spanned 5 weeks with majority of the cases occurring in the 2nd week. There was a clustering of cases in one of the five quarters/settlement – Otesile. The measles immunization coverage for the community was estimated as 22.9%. The stated reasons for the poor uptake of immunization were lack of time, not regarding it as important. A total of 432 children aged 9 months to 15 years received measles antigen during the response vaccination campaign. The measles outbreak in Ogunmakin village was due to low routine immunization coverage resulting in an accumulation of susceptible children. Socio-cultural factors and weak health infrastructure contribute significantly to the low uptake of immunization. There is the need mobilized the entire community on the importance of immunization as well as strengthen the provision of routine immunization.[...] Read More.
Keywords: Measles, public health, immunization, childhood morbidity, childhood mortality, vaccination.
  2015, 14(1), 1-6; 
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Research Article
Elmira Gheytanchi, Fariba Heshmati, Bahareh Kordestani Shargh, Jamileh Nowroozi and
Abstract: -galactosidases enzyme have been used in the dairy industry for the improvement of lactose intolerance. The aim of this study was to detect b-galactosidase enzyme produced by isolated lactobacilli from milk and cheese. Isolated lactobacilli were cultured on MRS agar. Lactobacilli were identified by Gram stain and standard bacteriological and biochemical methods. Their ability to hydrolyze 5-bromo-4-chloro-3-indolyl- -D- galactopyranoside (X-Gal) and O-nitrophenyl- -D-galactopyranoside (ONPG) was determined. A protein band of indicated b-galactosidase enzyme was also detected by sodium dodecyl sulphate polyacrylamide gel electrophoresis (SDS-PAGE) method. The colonies that produced green color on X-Gal plates were lactobacilli with b-galactosidase enzyme which had ONPG positive results. The highest enzymatic value (1,966 U/ml) was observed in one strain of Lactobacillus delbrueckii. A 116 kDa protein band was detected in some strains (37%) with highest enzyme value and in others (63%), protein band was weak by SDS-PAGE method. By adding Lactobacilli producing b-galactosidase enzyme as probiotic to dairy products, could help lactose intolerant people.[...] Read More.
Keywords: Lactobacillus,  -galactosidase, X-Gal, ONPG, SDS-PAGE.
  2015, 14(1), 1-6; 
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Research Article
Maurice S. Mikhail, Kamel K. Sabet, Moawad R. Omar, Amal A. Asran and Khaled K. Kasem,*
Abstract: Twenty eight isolates of Rhizoctonia solani were obtained from cotton seedlings and twenty three isolates from other hosts; eight from peanut, five from chickpea, two from each of flax, tomato and watermelon and one from each of potato, cantaloupe, pepper and lupine. Microscopic examination revealed that 17 isolates (33.33%) each belonged to AG-2- 2, 17 and AG-4 HG-I, while 7 isolates (13.73%) belonged to AG -4 HG-II and 10 isolates (19.61%) belonged to AG-5. Pathogenicity test on cotton cultivar Giza 86, under greenhouse conditions, showed that 19 isolates significantly induced pre- and post-emergence damping-off, while they significantly decreased survival, plant height and dry weight. However, the pathogenic isolates of AG-2-2 represented 19.61% of the total isolates as well as the highest percentage of the pathogenic isolates (52.63%). There were no significant differences between effects of different AGs on the cotton seedling variables. Cluster analysis suggested that grouping the isolates based on their virulence patterns was not related to their geographic origins, AG or host.[...] Read More.
Keywords: Rhizoctonia solani, anastomosis groups, cotton, pathogenicity.
  2015, 14(1), 1-6; 
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Research Article
Selvakumar Dharmaraj*, B. Ashokkumar and K. Dhevendaran
Abstract: Nearly ten isolates of Streptomyces were found to be associated with two species of sponges namely Mycale mytilorum (Annandale) and Tendania anhelans (Lieberkuhn). Among the ten isolates, four strains of white series were selected and characterized by conventional methods and assessed for their antagonistic activity against fish pathogens like Aeromonas hydrophila and Vibrio sp. All the strains showed inhibitory activity against these fish pathogens. The screening of antibacterial substances by the Streptomyces isolates proved the production of highly polyene nature compounds which were observed using criteria like thin layer chromatography (TLC) and spectral analysis. The results of the present investigation revealed that the sponges associated Streptomyces were found to be promising source of antibacterial bioactive substances. It concludes that development of appropriate fermentation and downstream processing technologies would bring out new classes of antibiotic leads.[...] Read More.
Keywords: Antimicrobials, marine Streptomyces, marine sponges.
  2015, 14(1), 1-6; 
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Research Article
Pongsak Rattanachaikunsopon* and Parichat Phumkhachorn
Abstract: Carvacrol, a major compound naturally present in oregano and thyme and its precursor, cymene, were tested in vitro for their antimicrobial activity against Edwardsiella tarda, a fish pathogenic bacteria causing edwardsiellosis. When used alone, carvacrol, but not cymene, inhibited the bacterium with the minimal inhibitory concentration (MIC) of 20 ppm. However, cymene was shown to be able to enhance the inhibitory ability of carvacol indicated by the reduction of MIC to 5 ppm when used with 2.5 ppm of cymene. Based on mortalities in 2 weeks after intraperitoneal E. tarda injection, the median lethal dose (LD50) of E. tarda for tilapia (Oreochromis niloticus) was 5.0 × 102 CFU/g of fish. Fish diets supplemented with carvacrol and cymene were also tested for their protective effect against E. tarda infection in tilapia. The results showed that carvacrol (200 ppm) but not cymene (200 ppm) when fed prophylactically decreased the mortality in E. tarda-challenged tilapia. However, carvacrol at the same concentration could cause no mortality of E. tarda infected fish when used in conjunction with 200 ppm of cymene.[...] Read More.
Keywords: Carvacrol, cymene, Edwardsiella tarda, tilapia.
  2015, 14(1), 1-6; 
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Research Article
O. ’Lanre Olaitan*, O. O. Oyerinde, O. Obiyemi and O. O Kayode
Abstract: The study determined the job stress among primary school teachers in South-west, Nigeria. A total of 624 teachers were chosen as subjects using a multistage sampling technique, and a structure questionnaire was used to gather information from the subjects. Research hypotheses were formulated and inferential statistics of test and analysis of variance ANOVA were employed to analyze significant differences at a = 0.05 level. The differences were significant only for age and gender. Majority of the teachers have headache as symptom of poor health and majority of them engage in watching TV as a strategy for coping with stress. The major source of stress for the subjects is the society. It was recommended among others that, teachers working condition should be improved by planning educational ergonomics and of some social facilities such as: satellite TV; computer connected with Internet; and that the school curriculum should take into cognizance, sporting activities especially for the teachers which should be given a bit of knowledge in health education so to be able to understand themselves and generate more coping techniques for job stress.[...] Read More.
Keywords: Job, stress, ergonomics.
  2015, 14(1), 1-6; 
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Research Article
G. Aydemir*, C. Meral, S. Suleymanoglu , F. Karademir and Tarık engör
Abstract: To determine the bacterial etiology of acute middle ear infections in preschool age children. This prospective descriptive clinical study was implemented in Marmaris town between November, 2008 and May, 2009 with 80 cases. Their age ranged from 2 - 6. One fourth of the cases were preschoolers. The diagnosis of acute middle ear infection was confirmed by an otolaryngologist following a pediatrician and paracentesis that was performed. Bacterial culture was done in regular conditions and antibacterial resistance was assessed with disk diffusion method. Streptococcus pneumoniae was the most frequent etiologic agent. It was followed by Haemophilus influenzae (15%) and Staphylococcus aureus (6%) in order of frequency. The penicillin resistance rate of pneumococci was 24%.[...] Read More.
Keywords: Child, infection, middle ear infection.
  2015, 14(1), 1-6; 
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Research Article
Clara Prats*, Jordi Ferrer, Daniel López, Antoni Giró and Josep Vives-Rego
Abstract: Individual-based modelling (IbM) has become a fully incorporated part of predictive microbiology methodologies in the last decade. Previous studies of bacterial culture growth cycle with the IbM simulator INDISIM analysed the evolution of bacterial biomass distribution during the different phases of growth. The predicted forward shift during lag, stability during exponential and backward shift when entering the stationary phase have been experimentally observed in an Escherichia coli batch culture by means of flow cytometry and particle size analysis measurements. In addition, the experimental results were analysed using the product distance, a mathematical tool developed to assess the evolution of cell size distribution. These results confirmed the assumptions about the bacterial lag phase made by INDISIM. Moreover, flow cytometry and particle analysis methods were shown to be useful experimental techniques in combination with IbM simulations when studying the evolution of individual properties during the bacterial growth cycle. This is essential in order to provide a new and consistent interpretation of the dynamics and heterogeneity of cell biomass during the growth cycle.[...] Read More.
Keywords: Bacterial cell cycle phases, biomass distribution, individual-based modelling, flow cytometry, particle size analysis.
  2015, 14(1), 1-6; 
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Research Article
Dilek Satana*, Gonca Erkose Genc and Zayre Erturan
Abstract: Oropharyngeal candidiasis (OPC) is the most common HIV related oral lesion. Most patients are infected with a strain originally present as a commensal of the oral cavity. The resistance of Candida isolates to antifungal drugs is important due to morbidity and mortality. The aim of our study was to investigate the antifungal susceptibility profiles of oral Candida spp which were isolated from HIV-infected patients. In vitro susceptibility tests were performed using the broth microdilution method recommended by the Clinical and Laboratory Standard Institute (CLSI). A total of 67 oral Candida isolates from colonized HIV-infected patients, which were previously isolated and identified were included in this study. MIC ranges were 0.12 - 4.0, 0.12 - 16, 0.03 - 1.0, 0.03 - 1.0, and 0.03 - 0.25 µg/ml for amphotericin B, fluconazole, itraconazole, ketoconazole and voriconazole, respectively. All isolates were fully susceptible to voriconazole. Sixty five (97%) of all isolates were determined fully susceptible to amphotericin B, 66 (98.5%) to fluconazole, 64 (95.5%) to ketoconazole and 50 (88%) to itraconazole. No resistance was detected to fluconazole and voriconazole in oral Candida strains isolated from colonized Turkish HIV positive patients. Antifungal resistance was detected in 8.96% (6 strains) of all isolates tested.[...] Read More.
Keywords: HIV, Candida, oropharyngeal carriage, antifungal agents, antifungal susceptibility.
  2015, 14(1), 1-6; 
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Research Article
Chen-Xiaoxi and Chen-Weiliang
Abstract: With a view to exploring whether there was a correlation between a novel antibiotic and a plasmid, the plasmid was eliminated by SDS. Because the elimination of the plasmid had no effect on the bacterium’s producing antibiotic, it was determined that the plasmid had nothing to do with the antibiotic. However, with the plasmid being eliminated, the ability of the bacterium to secrete a kind of adhesive substance was lost, and the phenotype of the bacterium was also changed. This indicated that the plasmid was closely related to this adhesive substance and that the adhesive substance determined the bacterium’s phenotype. In addition, losing the plasmid meant losing life if the bacterium was under adverse circumstances like cold condition. It meant that the function of the plasmid (or the adhensive substance) was to protect the bacterium.[...] Read More.
Keywords: Plasmid, phenotype, antibiotic, viability, bacterium.
  2015, 14(1), 1-6; 
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Research Article
Nipun Silawat*, Shweta Chouhan, Pramod Sairkar, R. K. Garg, Neetu Vijay and N. N. Mehrotra
Abstract: In this research study, three samples were collected from the T.S. Murthi Udhyan, Obedullahganj out of which two samples were from agriculture field soil and the third sample was from compost. Pure cultures of bacteria were isolated by using serial dilution and spread plate methods. The isolated bacterial cultures were separated according to the morphotypes and then bio-chemically tested. They were further identified with the help of bacteria identification program (PIBWin 2007). The identified bacterial cultures are Achromobacter group F, Acinetobacter calcoacet, Pseudomonas aeruginosa, P. malli, P. putida, P. cepacia, P. shutzeri, P. pseudomalli, P. malli and P. pickettii. The value of Simpson’s index (D) is 0.09, which represented high diversity. Isolated bacteria were inoculated in micro titer plates and Niche overlap index (NOI) was calculated after two days of inoculation. The results of study indicate that direct incubation of samples in micro titer plates produces patterns of metabolic response useful in the classification and characterization of microbial communities. Principal component analysis of colour responses quantified from digitized images of plates revealed distinctive patterns among microbial habitats and spatial gradients within soil and compost sites. Correlation of the original carbon source variables to the principal components gives a functional basis to distinctions among communities. Intensive spatial and temporal analysis of microbial communities with this technique can produce ecologically relevant classifications of heterotrophic microbial communities.[...] Read More.
Keywords: Microdiversity, compost, sole source carbon utilization, testing.
  2015, 14(1), 1-6; 
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Research Article
Fu Xiao Shen, An Chun Cheng, *, Ming Shu Wang, Hai Bin Huang, Chuan Feng Li, Jin Feng Jiang, Ren Yong Jia, De Kang Zhu, and Xiao Yue Chen
Abstract: The aim was to identify the factors affecting synonymous codon usage bias in the newly discovered gC gene of duck plague virus (DPV) CHv strain and a comparative analysis of the codon usage bias in the gC genes of 27 other reference herpesviruses was performed by using CAI, CHIPS and CUSP program of EMBOSS. The results showed that base composition, mutational bias and natural selection were the major determinants of the codon usage variation in the DPV gC gene. The primary codon usage trends in the DPV gC gene showed obvious difference with a strong bias towards the synonymous codons with A and T at the third codon position. Characterization of nucleotide composition in the DPV gC gene was related to dinucleotide usage bias characterized by the variation of CpG islands. The ENc-plot and GC12s-GC3s revealed that the genetic heterogeneity in the gC genes of the 28 herpesviruses were constrained by G + C content. Moreover, the phylogenetic analysis demonstrated that codon usage patterns of the DPV gC gene were phylogenetically conserved and similar to the gC genes of the avian alphaherpesvirinae. Furthermore, comparisons of the codon preferences in the DPV gC gene with those of Escherichia coli, yeast and human revealed that there was a statistically positive correlation between DPV and yeast (r = 0.646, P < 0.05) . The above results could provide useful information for the synonymous codons usage bias of the DPV gC gene and promote the relevant mechanism for evolution, pathogenesis and functional studies in the area of DPV research and possibly studies with other herpesvirus viruses.[...] Read More.
Keywords: Duck plague virus (DPV), gC gene, codon usage bias.
  2015, 14(1), 1-6; 
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Research Article
Hassan Momtaz*, Elahe Tajbakhsh, Behnam Abbasian and Manochehr Momeni
Abstract: Mastitis is one of the common diseases of dairy cattle and an inflammatory response of the mammary glands tissue. Mastitis causes considerable loss to the dairy industry. Among several bacterial pathogens that can cause mastitis, S. aureus is probably the most lethal agent because it causes chronic and deep infection in the mammary glands that is extremely difficult to be cured. The present study was to detect agr group genes in the S. aureus isolated from 360 mastitis milk samples in Chaharmahel va Bakhtiari and Isfahan provinces of Iran via PCR by using specific primers. Among 360 milk samples, 86 samples contained 1250 bp fragment of the 23srRNA gene, 10 samples contained agrI gene, 42 samples contained agrII gene, 19 samples contained agrIII gene and 15 samples contained agrIV gene.[...] Read More.
Keywords: Bovine mastitis, S. aureus, agr group genes, PCR, Iran.
  2015, 14(1), 1-6; 
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Review
N. F. Tanih, L. M. Ndip, A. M. Clarke, R. N. Ndip,*
Abstract: Helicobacter pylori induces chronic gastritis, the strongest known risk factor for peptic ulcer disease, distal gastric cancer and a number of extra gastric related morbidity. More than 50% of the world’s population is infected with this organism lifelong without effective bacterial eradication. Clinical sequelae are dependent upon bacterial virulence factors and host genetic diversity, particularly within immune response genes. The organism is able to evade the harsh acidic environment in the gastric mucosa and host immune response by elaborating a number of factors that aid in the achievement of its persistent colonization. H. pylori possess numerous virulence proteins (cagA, vacA and iceA) and enzymes (urease, catalase, lipase, phospholipase and proteases) with substantial genotypic diversity, which engenders differential host inflammatory responses that influence the pathologic outcome. The hallmark of H. pylori infection is a marked inflammatory response with the infiltration of various immune cells into the infected gastric mucosa; with a polarized Th1 immune response which further attracts inflammatory cells to the gastric mucosa leading to damage. Knowledge on H. pylori reservoirs and transmission remains elusive. However, studies have described the gastro-oral, oral-oral and faecal-oral as possible routes of acquisition and transmission. This paper provides an understanding of H. pylori persistence and pathogenesis as well as its route of transmission.[...] Read More.
Keywords: Helicobacter pylori, pathogencity, virulence factors, epidemiology, risk factors, immune evasion.
  2015, 14(1), 1-6; 
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Research Article
Temitope O. Oguntade* and Adedotun A. Adekunle
Abstract: Fresh visually healthy seeds of Zea mays (maize), Cucumeropsis mannii (melon) and Phaseolus vulgaris (bean) were stored under three conditions, wood ash of some tropical forest trees in Nigeria namely; Khaya grandifoliola, Nauclea diderrichii, Piptadeniastrum africanum, Mangifera indica, Mansonia altissima, Triplochiton scleroxylon, Ceiba pentandra, Terminalias superba, Terminalia ivorensis). Seeds treated with benlate, an orthodox fungicide and seeds without any treatment to serve as the control of the experiment. These were set -up at two different locations on the campus (the laboratory and the botanic garden) for six months. The seeds stored with ashes of Nauclea diderrichii and Piptadeniastrum africanum were the most effective, stopping fungal growth and eliminating weevils compared to those seeds stored with benlate which is only effective against fungal growth. P. vulgaris (bean) seeds are the best stored of the three seeds probably due to the low moisture content of the seed. Four pathogenic fungi were isolated from the seeds (maize, melon and bean) at both locations and these include; Aspergillus niger, Aspergillus flavus, Aspergillus fumigatus and Rhizopus racemosa. Preliminary phytochemical screening revealed that some of these ashes contained a number of active compounds which enable them (ashes extracts) to inhibit the growth of the pathogenic fungi.[...] Read More.
Keywords: Seeds, storage fungi and wood-ash.
  2015, 14(1), 1-6; 
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Research Article
V. O. Adetunji
Abstract: Three strains of Escherichia coli 0157:H7 and eleven strains of Listeria monocytogenes isolated from West African wara cheese were analysed for cellulose production, fimbriae formation, zetapotential and biofilm formation which are of relevance in food processing. E. coli c produced no fimbria, very low cellulose and significantly lower zetapotential (-3.1) among the three strains. The L. monocytogenes (b) had the highest zetapotential (-39.1) and cellulose production at 24 h of incubation. Next to it was L. monocytogenes (f) which also had a higher cellulose production at 72 h incubation. A positive correlation exists between zetapotential and cellulose production in the E. coli strains (R2 = 0.67) while Listeria monocytogenes strains gave a negative correlation (R2 = -0.08) . There was no significant difference in biofilm formation in the L. monocytogenes strains (P < 0.05), however the L. monocytogenes (a) had the highest at 48 h incubation. Weak positive correlation (R²) values of 0.0397, 0.002 and 0.0011 were obtained for 24, 48 and 72 h incubation for Listeria monocytogenes counts (cfu/ml) and cellulose measurements. This study further accentuate and confirmed the presence of E. coli and L. monocytogenes with virulent factors that of relevance to the method of processing in West African soft cheese. The need for an improved hygiene during processing and sale of this product to prevent the transmission of these pathogenic organisms to humans is therefore emphasized.[...] Read More.
Keywords: West African soft cheese, Escherichia coli, Listeria monocytogenes, virulent strains.
  2015, 14(1), 1-6; 
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Short Communication
Hongbo Ma, Yunpeng Diao, Danyu Zhao, Kun Li* and Tingguo Kang*
Abstract: Currently, a pandemic swine influenza A virus infection causes a huge negative impact on human beings all over the world. However, the methods of treatment are not satisfactory, therefore it is urgent for us to set up new theory and practice to fight against the intractable virus. Terminalia chebula Retz, as a kind of traditional Chinese medicine, widely distributes and has multiple pharmacological effects. Evidences in laboratory and clinic practice confirm us to the potential of Terminalia chebula Retz inhibiting influenza A virus infection. We thus hypothesize that acetone extracts (tannic acids, A) of Terminalia chebula Ret may as a new alternative treat influenza A infection based on holistic concept of traditional Chinese medicine principle.[...] Read More.
Keywords: Swine influenza A virus, Terminalia chebula Retz, hypothesis.
  2015, 14(1), 1-6; 
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Research Article
Mojtaba Moosavian* and Davoud Darban
Abstract: Staphylococci are important organisms involved in many infections, including bacteremia or septicemia. Repetitive sequence–based PCR (rep-PCR) is a useful method for detection of staphylococcal DNA fingerprint patterns, especially when the origins of these organisms are unknown. Staphylococcal positive blood cultures were collected from patients with bacteremia hospitalized in four hospitals. The patients who had two positive blood cultures out of three samples were considered as subjects. After isolation of staphylococci on blood agar medium, the species of isolates were determined by standard biochemical tests. DNA was extracted from bacterial cells and genomic fragments were amplified by rep-PCR. Furthermore, relationship of strains was determined based on the similarities between DNA fingerprints by using Jaccards coefficient. In this survey, 88 cases of bacteremia caused by coagulase positive Staphylococcus aureus (36 cases), and coagulase negative strains (52 cases), were studied. Extracted DNA from staphylococcal isolates generated multiple fingerprints in sizes ranging between 600(61%) and 2642 bp (87.5%) by rep-PCR method. The fingerprint patterns of S. aureus (33 strains), S. epidermidis (32 strains) and S. lugdunensis (7 strains) were 31, 30 and 7 types, respectively. This study demonstrated only a few of Staphylococci strains that displayed similarity or that are closely related in the DNA fingerprint patterns. We concluded that rep-PCR is a rapid, simple and suitable method for epidemiological studies. The results of our study also showed that most of Staphylococci isolated from bacteremic patients produced "different" genomic fingerprint patterns by rep-PCR and so, at present study, dissemination source of infection is different.[...] Read More.
Keywords: rep-PCR, fingerprint patterns, Staphylococci, bacteremia.
  2015, 14(1), 1-6; 
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Review
Liew Yun Khoon and Vasanthakumari Neela*
Abstract: Presence of secreted proteins is the key for sustenance of Staphylococcus aureus strains in the host system. General secretory (Sec) system is a well known and major secretion system that is responsible for the transportation of exoproteins across the bacterial cytoplasmic membrane and cell wall. In order to define the secretome of S. aureus, the availability of combination of two-dimensional gel electrophoresis (2-DE) with the latest advanced techniques (MALDI-TOF and ESI-MS/MS) has provided a powerful tool for the investigation of a large number of protein spots with the aim of identifying new drug candidates and discovering new diagnostics tools. In this paper, we present a short review regarding S. aureus general secretory system and role of secreted protein in host cells, and discuss the proteomic, together with genomics of S. aureus.[...] Read More.
Keywords: Staphylococcus aureus, secretome, general secretory system, pathogenesis, proteomic.
  2015, 14(1), 1-6; 
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Research Article
Grace Rinmecit Pennap*, Aliyu Yakubu, Odula Oyige and Joseph Forbi
Abstract: Hepatitis B (HBV) and hepatitis C (HCV) virus infections have remained recurring decimals in blood transfusion, vertical transmission, liver cirrhosis and hepatocellular carcinoma (HCC). Most of the published studies of their prevalence in Northern Nigeria are among HIV/AIDS patients. The need for such vital information among an apparently healthy population was the basis for this study. Rapid diagnostic tests were used to screen for HBsAg and anti-HCV antibodies among people of a local community in Northern Nigeria. Of the 113 volunteers screened, 15(13.2%) were positive for each of the viruses while 10(8.85%) were found to be coinfected with the viruses. The gender related prevalence of HBsAg was 9.5% in females and 24.1% in males. Anti-HCV was reactive in 16% of the females and 3.4% of the males. Coinfection was 10.3 and 8.33% for males and females, respectively (p > 0.05). Age related prevalence for HBsAg was 13.8 and 11.5% among those aged 1 - 40 years and above 40 years, respectively and similarly 12.6 and 15.4% for anti-HCV antibodies, respectively. Coinfection was 8.0% among those aged 1 - 40 years old and 11.5% among those that were older. There was no statistically significant association between age, and presence/absence of facial/body marks with viral infection (p > 0.05). This study revealed 13.3% of apparently healthy individuals harbouring each of the viruses (HBV and HCV) and also a relatively high prevalence of coinfection (8.85%). This finding is a cause for alarm.[...] Read More.
Keywords: HBV, HCV, prevalence, infection, coinfection.
  2015, 14(1), 1-6; 
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Short Communication
A. O. Ajayi* and T. A. Akintola
Abstract: Enterobacteria are often responsible for various gastrointestinal foods borne infection in humans especially in the developing countries. Cassia occidentalis, Croton zambensicus and Newbouldia leavis known as ‘Ewe ori esi’, Ajekobale and Akoko respectively in Yoruba are three plants whose leaves are used in combination by boiling to treat gastrointestinal and diarrhea illnesses among indigenes of Akungba-Akoko, Ondo State, Nigeria. The leave extracts from these medicinal plants were screened in vitro in the laboratory for their antibacterial activity against two prominent enteric bacteria, that is, Escherichia coli and Salmonella typhimurium using the agar disc diffusion method. The tyndalized leave extract of C. zambesicus showing antibacterial inhibition zone of 4 and 2 mm against S. typhimurium and E. coli respectively exhibited highest activity during the study than the autoclaved samples and other plant sources tested independently or combined, showing that the combinations of the extract samples do not exhibit synergistic effects. C. zambesicus can however be optimized clinically for chemotherapeutic control of these food-borne enteric infections.[...] Read More.
Keywords: Antimicrobial, enterobacteria, evaluation, food -borne, pathogens, plants.
  2015, 14(1), 1-6; 
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Research Article
Akaneme Florence Ifeoma* and Ene-Obong Efiom Ene-Obong
Abstract: The effects of three soil collections from old pine plantations in Nigeria: Enugu, Ugwuoba and Nsukka and a control soil on mycorrhizae development as well as morphology of the mycorrhizal rootlets, anatomical confirmation of mycorrhizae development were investigated. Enugu soil induced the greatest mycorrhizal infection (44%) and growth of seedlings. It is, therefore, recommended for nursery inoculations of pine seedlings. Bifurcate mycorrhizae characteristic of pines were observed in all treatments. Coherent rhizomorphs were found to be associated with mycorrhizae in Enugu, Ugwuoba and Nsukka soils. Anatomy of the mycorrhizae showed the presence of a fungal sheath and the cortical layer with associated Hartig net. The presence of clamp connections in the fungal sheath and rhizomorphs places the fungi involved in the class Basidiomycetes.[...] Read More.
Keywords: Mycorrhizae, Pinus caribaea, seedlings.
  2015, 14(1), 1-6; 
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Research Article
A.  Torres-Morquecho, A. Rivera-Tapia, F. González-Velazquez, J. Torres, B. Chávez-Munguia, L. Cedillo-Ramírez and S. Giono-Cerezo*
Abstract: Ureaplasma sp. is associated with chronic lung disease and it has been implicated in the morbidity and mortality of new born babies (human). Adherence is an important process for lung infection, and scarce information is available in this respect. This work shows its adhesion to epithelial cells from the respiratory tract in culture, and evaluates the Ureaplasma sp. references and clinical strains isolated from premature newborns. Ureaplasma parvum and Ureaplasma urealyticum serotype 8 and five clinical samples were evaluated, using the Bertholet assay. They were observed by scanning and transmission electron microscopy to A549 cell line. Adherence was abolished by pre-treatment of ureaplasmas with A549 cell extracts and inhibited by pretreatment of ureaplasmas with N-acetylneuraminic acid, trypsine, glucose and monoclonal antibodies (mAb 106.C anti-MB against U. parvum serotype 3). Ureaplasma sp. (biotypes 1 y 2) adherence had no significant difference (P = 0.127) . The clinical strains by scanning electron microscopy showed a similar damage. Both reference and clinical strains produced evident changes in cell morphology. Micro-colonies were observed on the cells. By transmission electron microscopy, ureaplasmas attached on the cell surface and into the cytoplasm were observed. The A549 cellular line is a good model for the study of adherence of Ureaplasma sp. The urease test by Bertholet assay is a good indicator of colonization. These data suggested that ureaplasma adhesins are proteinaceous antigenic substance. Inhibition assays with neuraminidase and glucose showed binding to sialic acid residues and suggested as possible adhesin to MB (multi banded antigen).[...] Read More.
Keywords: Ureaplasma urealyticum, adherence, epithelial cells, damage.
  2015, 14(1), 1-6; 
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Research Article
Linhui Li*, Qingyu Yin, Xiaohong Liu and Hong Yang
Abstract: An  efficient  protocol  for  protoplast  isolation  and  regeneration  was  first  established  in  Coprinus Comatus. The highest yield of protoplasts was up to 8.9 × 106 cells/ml in digestion solution containing 2.0% lywallzyme and 0.6 M KCl after incubation of four-day-old mycelia at 30°C for 3 h; among which, about 1.4% protoplasts could be regenerated into mycelia after 4 - 6 days of incubation at 25°C in CYM medium with 0.6 M mannitol as osmotic stabilizer. The results are beneficial for breeding new cultivars by the methods such as protoplast fusion, mutagenesis as well as transformation. Moreover, the stepwise procedure for protoplast liberation and regeneration could be referred in other species.[...] Read More.
Keywords: Coprinus comatus, mycelia, lywallzyme, protoplast, liberation and regeneration.
  2015, 14(1), 1-6; 
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Research Article
Özgür Güçlü*, Halil Bıyık and Aslı ahiner
Abstract: The aim of this study was to investigate the mycoflora of the loggerhead turtle, Caretta caretta, from its nests and eggshells at Fethiye Beach, Turkey. During the 2004 breeding season, following the complete emergence of the hatchlings, sand samples were collected from 15 nests and eggs from these nests were swabbed. Rose Bengal chloramphenicol agar was used for isolation, and then mycoflora were subcultured onto suitable media. Fungi were counted and identified at genus level. Ten genera were identified within the nests and eggshells. Aspergillus sp., Chrysosporium sp., Fusarium sp. and Penicillum sp. were identified both in nests and eggshells. Furthermore, while Absidia sp., Cylindrocarpon sp., Emericella sp. and Mucor sp. were only identified in the nests, Cladosporium sp. and Thielavia sp. were only identified in eggshells. In addition, there was a positive correlation between total number of isolated fungus and embryonic death in nests (r = 0.53, p < 0.05). Hatching success was negatively correlated with total number of isolated fungus (r = -0.54, p < 0.05) . Our study indicates a relation between hatching success and fungal flora of the nests. Presence of fungi may also be important for the researchers who digs nest to avoid infections or allergies due to these fungi.[...] Read More.
Keywords: Mycoflora, fungus, Caretta caretta, Fethiye beach.
  2015, 14(1), 1-6; 
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Research Article
Jing Li, Shu Zhang, Guanghua Liu, Rui Zhao, Hui Xu, Dairong Qiao and Yi Cao*
Abstract: 12 strains of lipase - producing were isolated from 36 samples collected from oil - contaminated soil of machinery - repair plant, dining room, and vegetable market, respectively, of which strain (3 - 2) had the highest hydrolytic activity (17.1 U/ml). Immobilized cell of strain 3 - 2 onto sodium alginate and immobilized crude enzyme solution of strain (3 - 2) onto Sodium alginate were respectively used in two transesterification programs to transfer the Fatty acid methyl ester (FAME). Results showed that both immobilized crude enzyme solution and cell were of high transesterification efficiency for Transesterification Program I, respectively 32.72 and 26.84%. Cycle test done in this Program found that immobilized crude enzyme solution and cell still keep some transesterification efficiency after being recycled thrice at least. Meanwhile, hydrolytic activity of crude enzyme solution had some correlation with transesterification efficiency. However, hydrolytic activity of immobilized cell did not have a clear correlation with the latter. Strain (3 - 2) belonged to Sphingobacterium multivorum. Up to now, the transesterification research has not been reported.[...] Read More.
Keywords: Lipase, crude enzyme solution, bacterial cell, immobilized, transesterification.
  2015, 14(1), 1-6; 
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Research Article
Chang Gao Wang, *, Ming Kai Chen and Tao Chen
Abstract: A novel microbial phospholipase C from Bacillus mycoides strain 970 was purified to apparent homogeneity by an improved purification process, in which DEAE-Cellulose adsorption was first used to remove bulk of dark brown impurities and then a combination of DEAE-Cellulose ion-exchange, Phenyl Sepharose hydrophobic interaction and Sephacryl S-100 gel filtration chromatography was used to separate the enzyme from remained contaminants. The enzyme appeared to be a single peptide of 75.1 kDa on SDS-PAGE. The optimum temperature and pH of the enzyme were 60°C and 7.0 - 7.5, respectively. The enzyme was stable at temperatures lower than 50°C and pH 5 - 9.5. This purified phospholipase C was characterized as a metallophospholipase C and Ca2+, Mg2+ , Zn2+, Ba2+ were essential for its PLC activity. The enzyme showed no lecithinase activity on egg yolk agar and also no hemolytic activity on blood agar.[...] Read More.
Keywords: Phospholipase C, purification, metalloenzyme, nonhemolytic activity, Bacillus mycoides.
  2015, 14(1), 1-6; 
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Research Article
Omilabu A. Sunday*, A. Bankole Munir, O. Oyefolu Akeeb, A. Adesanya Bolanle and S. O. Badaru
Abstract: Studies on extracts and biologically active compounds isolated from medicinal plants have doubled in the last two decades. The leaves of Hibiscus sabdariffa (red and green leaved) and Celosia argentea were studied for their antiviral activities against Measles Virus (MV) as well as the effects of the extracts on Hep -2 cells. Ethanol extract of the leaves of each of these plants showed no toxicity to the Hep-2 cells at all concentrations used (5, 10 and 15 mg/ml). The pre-inoculative treatment of Hep-2 cells with plant extracts showed that C. argentea had no antiviral activities on MV at all concentrations (5, 10, 15 mg/ml) while H. sabdariffa had antiviral activities only at 10 and 15 mg/ml on MV. The post-inoculative treatment of Hep-2 cells with plant extracts showed that at 5, 10 and 15 mg/ml concentrations, H. sabdariffa had antiviral activities on MV while the antiviral activity of C. argentea could not be established at 10 and 15 mg/ml but did not show any antiviral activity at 5 mg/ml.[...] Read More.
Keywords: Hibiscus sabdariffa, Celosia argentea, antiviral, toxic, Hep-2 cell, herb, medicinal plant.
  2015, 14(1), 1-6; 
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Research Article
Z.  A. Zakaria*, A. S. Sufian, K. Ramasamy, N. Ahmat, M. R. Sulaiman, A. K. Arifah, A. Zuraini and M. N. Somchit 
Abstract: The aim of the present study is to determine the in vitro antimicrobial activity of various extracts, partitions and fractions of Muntingia calabura (Elaeocarpaceae) leaves against a selected panel of microorganisms. The leaves of M. calabura were soaked separately in the aqueous, chloroform and methanol solvent systems in the ratio of 1:20 (w/v) for 72 h and these procedures were repeated three times. Antimicrobial testing was carried out using the micro -broth dilution method. The microbes targeted were Staphylococcus aureus 25923, S. aureus 33591 (a multi-drugs resistant S. aureus (MRSA) isolate), Escherichia coli 35218, Pseudomonas aeruginosa ATCC 27853, Candida albicans 10231 and Microsporum canis ATCC 36299. The methanol extract inhibited MSSA (MIC = 1250 µg/ml; MBC = 1250 µg/ml) and MRSA (MIC = 1250 µg/ml; MBC = 1250 µg /ml) and considered the most effective extract and was further partitioned sequentially using the aqueous, petroleum ether and ethyl acetate. The ethyl acetate partition exhibited effective antibacterial activities with the MIC/MBC value of 156 and 313 µg/ml against S. aureus 25923 and S. aureus 33591, respectively. The ethyl acetate partition underwent fractionation process and yielded 15 fractions (A1-A15) of which only fractions A9 to A15 effectively inhibited the growth of S. aureus 25923 and S. aureus 33591 with MIC/MBC values ranging from 78 to 2500 µg/ml.[...] Read More.
Keywords: Muntingia calabura, Elaeocarpaceae, antimicrobial activity, micro-broth dilution, ethyl acetate fraction.
  2015, 14(1), 1-6; 
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Research Article
M. Sunitha*, P. Ellaiah and R. Bhavani Devi
Abstract: The medium components influencing the enzyme production were screened using Plackett-Burman design. A total of 67 nutrients comprising of fifteen each of carbon, nitrogen, mineral/salt and eleven each of inorganic nitrogen sources and amino acid sources were screened for the production of L-asparaginase by SmF. This design involves screening of up to ‘n-1’ variables in just ‘n’ number of experiments. Regression coefficients and t-values were calculated by subjecting the experimental data to statistical analysis. Among the 67 nutrients based on their performance in terms of product yield and cost, tapioca starch, L-asparagine, ammonium oxalate, gelatin and CaCO3 were identified as most effective and therefore selected for inclusion in surface methodology studies.[...] Read More.
Keywords: L-asparaginase, nutritional factors, submerged fermentation, Bacillus cereus MNTG-7.
  2015, 14(1), 1-6; 
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Research Article
Lu Hui, Li He , Lu Huan, Li XiaoLan* and Zhou AiGuo
Abstract: In this study we assessed the chemical composition, antioxidant and antibacterial activities of Lavender essential oil. The antioxidant and antibacterial capacity of test sample was assayed by a linoleic acid system and conventional method of bacterial growth inhibition. The results demonstrated that the essential oil consisted of 1,5-Dimethyl-1-vinyl-4-hexenyl but yrate as the most abundant component (43.73%), followed by 1,3,7-Octatriene, 3,7-dimethyl- (25.10%), Eucalyptol (7.32%), and Camphor (3.79%). Lavender essential oil display the stronger antioxidant activity against lipid peroxidation in a linoleic acid model system and good antibacterial activity against four rhinitis-related bacteria including staphylococcus aureus, Micrococcus ascoformans, Proteus vulgaris and Escherichia coli.[...] Read More.
Keywords: Antibacterial, Lavender; antioxidant, essential oil, extraction, rhinitis.
  2015, 14(1), 1-6; 
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Research Article
Chen-Xiaoxi and Yue Jun*
Abstract: The antibiotic produced by a newly isolated Bacillus subtilis has potent anti-tubercular activity against sixteen strains of Mycobacterium tuberculosis, most of which belong to MDR strains. MICs for the sixteen strains were evaluated. A series of spectrum analysis and element analysis determined that the antibiotic’s molecular formula was C27H46O2.[...] Read More.
Keywords: Bacillus subtilis, antibiotic, MIC, serum, anti-tubercular.
  2015, 14(1), 1-6; 
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Research Article
Hossein Hassanpour Darvishi*, Mohammad Manshouri, Hossein Sedghi and Sayed Habib Mousavi Jahromi
Abstract: In this experiment, we have used the soil profile as a biological filter that can to absorb pollution and microbes in the domestic wastewater at Iran during 2009. In this experiment, we had 15 lysimeters, that were planted canola (Brassica napus L.) in 1 to 5 lysimeters and were irrigated by domestic wastewater with BOD5 about 150 mg/lit and primary drainage water were accumulated. In the 6 to 9 lysimeters was planted alfalfa (Medicago sativa L.) and were irrigated by primary drainage water and then, were accumulated secondary drainage water. We have irrigation 10, 11 and 12 lysimeters by secondary drainage water that was planted inside the basil (Ocimum basilicum L.). In order to compare plants characteristics, in 13, 14 and 15 lysimeters were planted canola, alfalfa and basil respectively and were irrigated by agronomical water. The results showed that the soil could reduce BOD5 and COD from 150 and 232 mg/lit to 11 and 18 mg/lit respectively in secondary drainage water. The essential oil yield of basil 17% increased under irrigation by secondary drainage water into irrigation by agronomical water. Therefore, the use of secondary drainage water can be increase the quantity and quality yields in plants and the other hand, protects sweet water resources.[...] Read More.
Keywords: Domestic wastewater, agronomical water, essential oil yield, basil.
  2015, 14(1), 1-6; 
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Research Article
Y. Cwala, C. P. Laubscher, P. A. Ndakidemi* and A. H. Meyer
Abstract: A hydroponic trial was carried out to assess the effect of inoculating tomato plants with AM fungi, in the presence and absence of a mycorrrhizal stimulant (Mycotech). Four treatments were applied: (1) AM inoculant, (2) mycorrhizal stimulant, (3) AM + Stimulant and (4) Stimulant alone. Arbuscular mycorrhizal treated plants were 14% root colonized, whilst AM + Stimulant treated plants, were 25% colonized. No colonization was observed in non -AM and non-AM + Stimulant treated plants. However, AM + Stimulant treated plants did not show any significant improvement over AM treated plants, in either the plant nutrient concentrations, except Cu, or the growth of the plants, despite a root colonization advantage. In general, there was also no improvement in colonized plants over non- colonized plants, possibly due to the abundant supply of nutrients. However, Stimulant treated plants performed better than the other plants in terms of their P, K, Ca, Mg and Mn nutrition. The causes of this increase remain unknown. This study has shown that the combined use of mycorrhizal stimulant and AM have a definite advantage for improving root colonization levels, but more research with regard to nutrient supply in the system, is required to ensure further benefits to the plants.[...] Read More.
Keywords: Arbuscular mycorrhizal, dry matter, hydroponics, inoculant, macronutrients, micronutrients, tomatoes.
  2015, 14(1), 1-6; 
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Research Article
Ashish Sachan,*, Shashwati Ghosh, and Adinpunya Mitra
Abstract: The aim of this paper was to study the catabolic product(s) of p-coumaric acid by a white rot fungus, Schizophyllum commune. TLC and HPLC chromatogram showed that p-hydroxybenzoic acid was formed as a major degradation product of p-coumaric acid. The purity of p-hydroxybenzoic acid was further confirmed by mass spectrometry. A maximum amount 2.5 mg/l of p-hydroxybenzoic acid was detected in the culture medium on 12th day of incubation using 5.0 mM p-coumaric acid as sole source of carbon. It was assumed that during the process of p-coumaric acid degradation, p-hydroxybenzaldehyde was produced as an unstable intermediate, which was rapidly converted into p-hydroxybenzoic acid and accumulated in the media. An indication of a very slow reverse conversion, that is, p-hydroxybenzoic acid into p-hydroxybenzaldehyde was also traced.[...] Read More.
Keywords: p-coumaric acid, Schizophyllum commune, p-hydroxybenzoic acid.
  2015, 14(1), 1-6; 
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Research Article
I. A. Adetunde*, A. A. Onilude and L. A. Adetunde
Abstract: The effect of particulate materials on lactic fermentation of cassava using both spontaneous and starter culture - Lactobacillus plantarum was investigated. The mean value counts during spontaneous fermentation, the total dissolved loads in all the samples, the total reducing sugars of all samples, the microbial loads in all the samples, the contents of crude protein, crude fibre, ash contents, ether extract, phytic acid and tannin were determined. All samples had an increase in lactic acid bacteria counts through out the fermenting time of 72 h than total bacteria counts in all samples. Sample A had the highest counts of lactic acid bacteria but total bacteria counts in sample A showed decrease in their counts. Sample C had an increase in both lactic acid bacterial and total bacteria counts. Other samples with added particulate materials showed corresponding increase in lactic acid bacteria counts compare to total bacteria counts. There was corresponding increase in total dissolved solids of sample containing varying concentrations of particulate materials ranging from 300 - 2500 mg/l. Total reducing sugar content for the samples ranged from 3.0 - 6.4 mg/l. Sample A had the highest total reducing sugar of 6.4 mg/l at 72 h of fermentation while sample C had the lowest value of 4.8 mg/l. Sample A inoculated with starter culture and other samples with supplemented materials, sample A1, A2 and A3 had an increase in crude protein, crude fibre, crude fat/ether, phytic acid and tannin content than sample C which was not inoculated.[...] Read More.
Keywords: Particulate materials, samples.
  2015, 14(1), 1-6; 
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Research Article
Jianhua Lu* and Shuhui Wu
Abstract: The essential oil was extracted by Soxhlet method with anhydrous diethyl ether from Ailanthus altissima Swingle (Sapindales: Simaroubaceae) bark, a traditional Chinese herbal plant and its repellent, contact and fumigant activities were investigated against four major stored grain insects. A. altissima bark oil significantly repelled Tribolium castaneum (Herbst) (Coleoptera: Tenebrionidae), Oryzaephilus surinamensis (Linnaeus) (Coleoptera: Silvanidae), Sitophilus oryzae (Linnaeus) (Coleoptera: Curculionidae) and Liposcelis paeta Pearman (Psocoptera: Liposcelididae) adults, with the repellency value reaching IV grade or stronger during the whole exposure period. A. altissima bark oil also pos-sessed strong contact toxicity on S. oryzae adults which gradually enhanced with increased exposure time and the corrected percentage mortality reached 76.5% after 72 h treatment. Furthermore, A. altissima bark oil had high fumigant activity against O. surinamensis and S. oryzae adults with the corrected percentage mortality 99.3 and 81.9% within 24 h, respectively.[...] Read More.
Keywords: Ailanthus altissima bark, essential oil, stored-grain insects, bioactivity.
  2015, 14(1), 1-6; 
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Research Article
Subir Kumar Nandy and K. V. Venkatesh*
Abstract: An efficacy of a compound for antimicrobial characteristics is typically evaluated through experiments to obtain the minimum inhibitory concentration (MIC). Similarly, a minimum activating concentration (MAC) can be obtained for a compound necessary for growth. We report a protocol for the determination of MIC and MAC for antibiotic and exhibition assays, respectively using methylene blue reduction test. The assay has been demonstrated on the growth of Escherichia coli on the antibiotic kanamycin, as an inhibitor, and on vitamin B12, as an activator. The slope of discoloration of methylene blue was used to determine the growth and death rates of the organism. The use of the rate constants to determine MIC/MAC values established a rational basis for determination of these relevant constants. The methodology presented here is general and can be easily adapted to other systems. The dose-response curves for extent of death / growth can be used to establish the MIC90 or MAC90 for an inhibitor or an activator, respectively. The methodology presented here rationalizes and standardizes the antibiotic and exhibition assays. The main advantage of the reported assay is the rapid and easy determination of the MIC and MAC values. Keywords: Escherichia coli, vitamin B12, kanamycin, minimum inhibitory concentration (MIC), minimum activating concentration (MAC).[...] Read More.
Keywords: Escherichia coli, vitamin B12, kanamycin, minimum inhibitory concentration (MIC), minimum activating concentration (MAC).
  2015, 14(1), 1-6; 
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Research Article
Ayman Ahmed Elshayeb
Abstract: The existence of bacteriophages in wastewater of Soba Stabilisation Station was determined by isolating and identifying methods for their activities against Escherichia coli and Staphylococcus aureus isolated from the anaerobic, facultative and maturation ponds. The general viable count of the bacteria showed an average of 2.0 x 106 cfu/ml. In broth media the affection of the bacteriophage interactions with bacteria showed increasing of bacteriophages with concomitant decrease in bacteria due to culture clearance, where the readings of the turbidity for the first and second infection showed statistical significant of light transmission among E. coli phages’ samples due to place of sample collections as follows: from the anaerobic and facultative ponds P > 0.05, facultative and maturation P < 0.05 and anaerobic and maturation P > 0.05. Whilst, the S. aureus phages samples’ light transmission from the anaerobic and facultative P < 0.05, facultative and maturation P < 0.05 and anaerobic and maturation P > 0.05. On solid media, the affection of the bacteriophage was recognised by the phage plaque formation on bacterial cultures. The linear equations of phages’ densities and distributions according to their wavelength were y = 0.0008x + 0.0303 for E. coli phage and y = -0.0102x + 0.2438 for S. aureus phage. This study concluded that phages naturally present where their hosts present and naturally destroyed bacteria that aided to recover from polluted environment.[...] Read More.
Keywords: Bacteriophage, Escherichia coli/ general viable count, light transmission, linear equations, stabilisation station, Staphylococcus aureus.
  2015, 14(1), 1-6; 
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Research Article
O. Oyedeji*, P. O. Olutiola and M. A. Moninuola
Abstract: Continuous increase in the sale and indiscriminate consumption of packaged drinking waters in Nigeria is of public health significance. One hundred and eight samples comprising 16 bottled and 20 sachet water brands purchased randomly all over Ibadan and Ile-Ife cities in South Western Nigeria were analysed for presence of bacterial indicators of water quality. Total heterotrophic bacteria plate counts (HPC) ranged from 2 to 150 for bottled water and 5 to 200 for sachet water brands. One brand of bottled water and eight brands of sachet water had mean HPC greater than 100 per ml millilitre water and thus fell below the United States Environmental Protection Agency (USEPA) and World Health Organisation (WHO) drinking water standard of 100 HPC per millilitre water. Total coliforms and Escherichia coli were detected in only one brand of bottled water. All brands of sachet water (100%) had total coliforms, four brands (20%) had presence of E. coli while Enterococcus faecalis was recovered from two (10%) of the brands. Most of the sachet water brands fell below WHO drinking water standards and are therefore of doubtful quality. Efforts need to be intensified in the monitoring of activities in this rapidly expanding industry with a view to raising standards.[...] Read More.
Keywords: Bottled water, sachet water, microbiological quality, drinking water, South Western Nigeria.
  2015, 14(1), 1-6; 
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Research Article
Amita Mahajan*, Neetu and A. S. Ahluwalia
Abstract: The present investigation has been undertaken selecting a protein rich blue green alga Spirulina platensis in relation to change in functional properties of its proteins on chemical treatment with succinic anhydride, acetic anhydride and formaldehyde for succinylation, acetylation and methylation respectively. Modified proteins have been studied for their functional properties such as protein solubility, foaming properties; emulsification properties and viscosity. Protein solubility in unmodified water soluble Spirulina protein fraction was found to be 23%. It decreased considerably on treatment with all the three modifying reagents. Emulsification activity (EA) increased slightly on methylation, whereas succinylation and acetylation resulted in a decreased EA and emulsion stability (ES). Foam capacity (FC) increased on treatment with succinic anhydride at all the concentrations used, whereas acetylation and methylation could show an increase in FC only at lower concentrations. FC was found to be maximum on succinylation and minimum on acetylation. Foam Stability (FS) was found to be much higher with methylation and acetylation. The protein fraction modified with succinic anhydride has shown the maximum viscosity followed by acetylation. Methylation however, caused a rapid decrease in viscosity and it was more pronounced at lower concentrations.[...] Read More.
Keywords: Acetylation, functional properties, methylation, proteins, Spirulina platensis, succinylation.
  2015, 14(1), 1-6; 
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Research Article
Deepak Arora, Rakendra Singh*, Manjot Kaur and Rajinder S. Ahi
Abstract: Typhoid fever continues to remain a health problem as the causative organism Salmonella typhi has developed resistance to many of the antibiotics used. This study was undertaken to determine the current pattern of resistance to antimicrobial agents of S. typhi isolates obtained in a tertiary Health care Hospital. 309 samples were taken. Sensitivity to ampicillin, chloramphenicol, cotrimoxazole, ciprofloxacin and ceftriaxone was determined by disc diffusion, and the minimum inhibitory concentration (MIC) was determined. Antibiotic sensitivity was carried out by Kirby-Bauer method. ESBL screening and phenotype confirmation were done following National Committee for Clinical Laboratory Standards (NCCLS) recommendations for Escherichia coli. Isolation rates of Salmonella typhi was prominent in 2002 - 2003 and have remained stable. S. paratyphi-A is showing an increasing trend. The 3 common antibiotics which were showing resistance earlier are now showing sensitivity. The study indicates that MDR S. typhi is on the rise. There is also re-emergence of chloramphenicol sensitivity. Sensitivity pattern of causative organism must be sought before instituting appropriate therapy to prevent further emergence of drug resistance. Indiscriminate use of ciprofloxacin or ceftriaxone should be strongly discouraged. They should be used as second line agents. Also, the treatment must not be completely dependent on the Widal test. Blood culture and clinical history must be taken into consideration for treatment.[...] Read More.
Keywords: Ciprofloxacin, ceftriaxone, Enteric fever, multi-drug resistant (MDR) Salmonella, Minimum inhibitory concentration (MIC).
  2015, 14(1), 1-6; 
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Research Article
Yousef Mehmannavaz*, Cyrus Amirinia, Mortaza Bonyadi and Rasoul Vaez Torshizi
Abstract: The effects of Insulin-Like Growth Factor-1 polymorphism were examined on milk production traits and genetic trends in the Iranian Holstein bulls. A total of 282 bulls were genotyped for SnaBI restriction site in the 5' flanking region of IGF-1 by applying PCR-RFLP method. The allele frequencies for C and T alleles were 0.562 and 0.438, respectively. The results indicated that genetic variants at the 5'-noncoding region of the bovine IGF-1 gene had a marked effect on estimated breeding values of milk (EBVM) and fat yields (EBVF). The heterozygous bulls (CT genotype) had higher EBVM and EBVF than homozygous bulls (P < 0.1) . The average substitution effects of alleles were not significant for none of studied traits (P > 0.1). The studied polymorphism of IGF-1 showed no significant association with genetic trends of milk related traits (P > 0.1). These results suggest that allelic interaction in IGF-1 polymorphism as over dominance and might be effectiveness in animal improving by crossbreeding.[...] Read More.
Keywords: IGF-1, polymorphism, Holstein, genetic trend.
  2015, 14(1), 1-6; 
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Research Article
A. G. Murugesan*, T. Jeyasanthi and S. Maheswari
Abstract: The ability of five bacterial isolates (Pseudomonas aeruginosa, Klebsiella Sp., Escherichia coli, Bacillus Sp. and Corynebacterium) isolated from Brinjal cultivated field to degrade cypermethrin was studied. It was confirmed that these isolated organisms were able to utilize and degrade cypermethrin. In this five different bacterial colonies, P. aeruginosa, Klebsiella Sp., E. coli were found active in utilizing cypermethrin (1%) where as Bacillus Sp. and Corynebacterium were moderately active in utilizing cypermethrin (0.1%). The growth curve experiment was performed at 0.1 and 1% dose of cypermethrin to analyze the viable count of P. aeruginosa.[...] Read More.
Keywords: Cypermethrin, bacteria, utilization, growth kinetics, degradation, Pseudomonas aeruginosa.
  2015, 14(1), 1-6; 
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Research Article
Okwulehie, Ikechukwuka Cyriacus* and Alfred, Nnamdi Kingsley
Abstract: Anona muricata commonly known as sour-sop, belong to the family Annonaceae. It is a small slender tropical tree usually grown for its large fleshy and juicy fruits. The fruit of A. muricata plays an important role in the diet of many in many parts of the tropics including Nigerian. Unfortunately, the usefulness of the fruits of Anona is decimated by many fungi species. Investigation of the fungi that cause the deterioration of sour-sop (Anona muricata) was carried out in order to recommend the appropriate control measures. Mature fruits of A. muricata were collected from different locations in Abia State. Isolation, characterization and identification of fungi were made by plating washings from skin surface and extracted juice from pulp of the fruits in test tubes containing potato dextrose agar (PDA) and yeast malt extract agar (Difco) into which streptomycin sulphate was incorporated to inhibit bacterial growth. Inoculated tubes were incubated at 28 ± 2°C for 48 h. Control experiment was carried out with sterile peptone water instead of using the washings. The following filamentous and yeast fungi were isolated from the skin surface and pulp of the fruits: Aspergillus flavus, Aspergillus niger, Botryodiplodia theobromae, Colletotrichum sp., Fusarium solani, Mucor sp., Penicillium chrysogenium, Penicillium sp., Rhizopus stolonifer and Rigidoporus sp., Candida albicans, Saccharomyces cerevisiae, Saccharomyces rouxii and Torulopsis spp. The pathogenicity tests of the filamentous fungi isolated were carried out on mature green Anona fruits and were found to be pathogenic. The filamentous fungi were mainly responsible for the deterioration of the fruits of A. muricata in Abia state while the yeasts were fermentative.[...] Read More.
Keywords: Abia state, Anona muricata (Sour-sop) fruits, fungi, deterioration.
  2015, 14(1), 1-6; 
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Research Article
L. A. Rodrigues, M. B. T. Ortolani and L. A. Nero*
Abstract: Yoghurt consumption has been increasing since 1980 decade due to the search for healthy foods by consumers, including Brazil. In order to evaluate the quality of the yoghurt commercialized in Viçosa, Minas Gerais, Brazil, 36 samples were collected from markets and analyzed for coliforms (total and thermotolerant) and lactic acid bacteria (LAB) enumeration and pH, considering different times for expiration. Coliforms were not detected at levels higher than 0.3 MPN/g, and only 7 (19.4%) samples showed LAB counts lower than 107 CFU/g. However, the mean pH observed in these samples (4.4) was not significantly different when compared to samples with higher LAB counts, suggesting addition of weak starter cultures during the processing. In the samples with less than 15 days for expiration the LAB counts and pH values were 7.4 log CFU/g and 4.1, respectively, and they were lower when compared to samples with more than 16 days of commercial viability, but without significant differences. The obtained results indicate adequate quality of yoghurt commercialized in Viçosa.[...] Read More.
Keywords: Yoghurt, quality, coliforms, lactic acid bacteria, pH.
  2015, 14(1), 1-6; 
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Review
S. I. Nwadioha*, E. O. P. Nwokedi, E. Kashibu, M. S. Odimayo and E. E. Okwori
Abstract: Septicaemia is a common condition in children with a resultant high morbidity and mortality. The gold standard for diagnosis of septicemia is the isolation of bacteria agents from blood cultures. To determine the common etiology of septicemia in children and their antibiotic susceptibility pattern, a retrospective study with a review of blood culture reports of paediatric patients aged 0 - 15 years, suspected of septicemia, from October 2006 to October 2008 in the Medical Microbiology department of Aminu Kano Teaching Hospital, Kano, Nigeria was carried out. Out of a total of 3840 blood culture samples, only 18.2% was culture positive. Gram–negative and gram–positive bacteria constituted 69.3 and 30.7%, respectively. The most prevalent bacterial isolates were Escherichia coli (44.3%) and Staphylococcus aureus (30.7%). E. coli were sensitive to Ceftriaxone, Ciprofloxacin, Gentamycin and Clavulinate – Amoxyl. The commonest bacterial isolate from blood culture of children with suspected septicemia in Kano was E. coli. The most sensitive and preferable among the tested antibiotics was Ceftriaxone. Rational use of antibiotics with regular antibiotic susceptibility surveillance studies is recommended to maintain high antibiotic therapeutic profile.[...] Read More.
Keywords:
  2015, 14(1), 1-6; 
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Research Article
Muhammad Arfat Yameen, Hina Nasim, Naeem Akhtar, Saira Iram, Imran Javed and Abdul Hameed*
Abstract: The aim of this study was to evaluate the prevalence rate and antibiotic resistant pattern of methicillin-resistant Staphylococcus aureus (MRSA) and methicillin-resistant Staphylococcus epidermidis (MRSE). A prospective study was conducted at Holy Family Hospital Rawalpindi, Pakistan and Microbiology Research Laboratory, Quaid-i-Azam University, Islamabad, Pakistan during the period from December 2007 to August 2008. The antibiotic resistance pattern was studied for MRSA and MRSE isolated from nasal samples from patients admitted in medical and surgical intensive care units. The study was conducted on 283 isolates. The results depicted that 25% isolates of S. aureus were MRSA and 29.78% isolates of S. epidermidis were MRSE. All MRSA and MRSE were susceptible to vancomycin and quinopristin/dalfopristin while all isolates of MRSE were susceptible to teicoplanin. All the isolates of MRSA and MRSE were multidrug-resistant. The susceptibility of the isolates to the drugs varied greatly. The resistance rate of MRSA to various antibiotics was found to be as follow: cephalaxin (90%), cephalothin (58%), cephradine (86%), ciprofloxacin (80%), gentamicin (34%), imipenum (42%), levofloxacin (75%), tetracycline (49%), rifampicin (14%) and teicoplanin (3%). The resistance rate of MRSE to various antibiotics was found to be as follow: cephalaxin (64%), cephalothin (29%), cephradine (64%), ciprofloxacin (50%), gentamicin (21%), imipenum (7%), levofloxacin (21%), tetracycline (21%) and rifampicin (29%). The minimum inhibitory concentration (MIC) value for MRSA and MRSE in case of vancomycin ranged 1-4 g/ml, for tetracycline 4-128 g/ml, for rifampicin 0.5-32 g/ml and for gentamicin 0.5 – 64 g/ml. Both MRSA and MRSE showed variable susceptibility with different antibiotic groups but high susceptibility with streptogramin and glycopeptide antibiotics.[...] Read More.
Keywords: Antibiotic resistance, staphylococcus aureus, staphylococcus epidermidis, minimum inhibitory concentration.
  2015, 14(1), 1-6; 
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Review
Effects of parental involvement on students’ attitude and performance in science
Abstract: This paper examines the attitude of students towards Biology and Chemistry. There was also a focus on the parental involvement. This research was set out find out how parental involvement influences students’ attitude towards, and performance in the two science subjects. An attitude questionnaire developed and standardized by the researcher was used. It’s split-half reliability coefficient yielded 0.59 and 0.51 for Biology and Chemistry respectively. A sample of four hundred and eighty students participated in the study. Three hypotheses were raised and tested. The result obtained using chi-square analysis revealed that the level of the home influence has implication on school learning and that performances of students in science are a function of their attitudes to the subject. The phenomena observed were discussed in the light of prevailing conditions in most of the developing West African countries. Conclusively, home influence can be a tool to enhance school learning.[...] Read More.
Keywords: Attitude of students, biology, chemistry, parental involvement, performance, level of the home influence, influence of parental involvement.
  2015, 14(1), 1-6; 
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Research Article
Nibha Gupta*, Dolly Sahoo and Uday Chand Basak
Abstract: Phosphate solubilising ability of five Streptomyces isolated from the phyllosphere of Heritiera fomes grown in Bhitarkanika mangrove ecosystem was evaluated using tricalcium phosphate (TCP) in both plates and broth culture conditions as well as with and without NaCl. Streptomyces ST24 showed highest solubilization of TCP, with 50.8 and 48.0 mm of halo zone in the plate assay done at pH 7.2 and temperatures 30 and 37°C. Streptomyces ST21, ST24 and ST26 showed good solubilization of TCP in culture medium with 52.15, 50.77 and 52.07 µg/ml, respectively. The requirement of NaCl for better solubilization of TCP was observed in all Streptomyces. However, ST23 and ST24 showed solubilization activity without addition of NaCl. Thus the solubilization potential varies among different isolates of Streptomyces. It also differed according to incubation period. Over all, the best solubilization ability of all test Streptomyces could be observed in the presence of 0.2% NaCl. The solubilization might be due to production of acids by the culture, since the pH of the culture broth was changed from initial pH of 7.2 and 9.0 to lower pH values.[...] Read More.
Keywords: Phosphate solubilization, Streptomyces, mangrove, salt, NaCl.
  2015, 14(1), 1-6; 
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Research Article
Tarek, M. El-Nemr and Hesham E. Mostafa*
Abstract: A total of 9 lactic acid bacteria (LAB) isolated from Egyptian infants, belonging to lactobacilli strains, were screened and selected according to their amino acids production. The isolate strains produced different essential amino acids in fermentation of M17 medium. Lactobacillus strain L1 produced the highest yield of histidine 92.5 mg/l, L2 strain produced the highest amount of asparagine 59.61 mg/l, cysteine 32.96 mg/l, phenylalanine 17.49 mg/l and tyrosine 244.91 mg/l. On the other hand, Lactobacillus strain L3 is the most potential culture for the production of citrulline 61.12 mg/l and glutamic 68.78 mg/l. This strain also produced the highest amount of lysine, ornithine and proline, which were 57.04, 95.58 and 87.06 mg/l, respectively. While the strain L4 produced the highest amount of glycine 32.12 mg/l, strain L7 produced the highest amount of alanine 147.55 mg/l and strain L5 produced the highest amount of asparatic acid 218.09 mg/l. The present study concluded that the Lactobacillus strains have the potential to produce different amino acids with variance concentrations.[...] Read More.
Keywords: Lactobacilli, Lactobacillus, amino acids, screening, production.
  2015, 14(1), 1-6; 
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Research Article
Z.  A. Zakaria*, A. Mat Desa, K. Ramasamy, N. Ahmat, A. S. Mohamad, D. A. Israf and M. R. Sulaiman’
Abstract: The aim of the present study is to determine the antimicrobial activity of the aqueous, chloroform and methanol extracts of the leaves of Dicranopteris linearis (Gleicheniaceae) using the micro-broth dilution method. The leaves of D. linearis were soaked separately in distilled water (dH2O), chloroform and methanol in the ratio of 1:20 (w/v) for 72 h at room temperature, while some part of the methanol extracts was also partitioned with hexane, chloroform and methanol. The target microbe used were Staphylococcus aureus 25923, S. aureus 33591 (a methicillin-resistant S. aureus (MRSA) isolate), S. aureus 700699 (a vancomycin-intermediate resistant S. aureus (VISA) isolate), S. aureus 156 (a vancomycin -resistant S. aureus (VRSA) isolate), Escherichia coli 35218 and Candida albicans 10231. The results obtained show that the methanol extract was the most active in antimicrobial testing with the MIC/MBC values of 625 µg/ml. Based on this result, fractionation was carried out on the methanol extract and yielded eleven fractions. Of these, only B5, B6 and B11 fractions were found to be effective against S. aureus 33591 and S. aureus 25927 with MIC/MBC values ranging between 1250 - 2500 µg/ml. In conclusion, the D. linearis possess mild antibacterial activity against the selected panel of microbes, which explained the lack of claimed on the plant antimicrobial activity. Key word: Dicranopteris linearis, Gleicheniaceae, micro-broth dilution method, mild antibacterial, Stapylococcus aureus.[...] Read More.
Keywords: Dicranopteris linearis, Gleicheniaceae, micro-broth dilution method, mild antibacterial, Stapylococcus aureus.
  2015, 14(1), 1-6; 
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Research Article
Mohammad Hassan Khadem Ansari*, Mir-davood Omrani, Biet Sayyah and Sina Khadem Ansari
Abstract: There are evidences of relationship between chronic infections of Helicobacter pylori (H. pylori) and gastritis in some previous studies. The gastritis caused by H. pylori leads to a change in serum levels of lipids, lipoproteins, apolipoprotein-A1 (Apo-A1), apolipoprotein- B (Apo-B) and lipoprotein- a (Lp(a)) . These changes will lead to thrombogenesis and other cardiovascular diseases. The aim of this study is to find out a correlation between lipids profiles and helicobacter gastritis. In this study 20 males and 20 females in age between 30 - 50 years old with gastritis resulting from H. pylori were chosen as patients group. Patients serum levels of Apo- A1, Apo -B and Lp(a) as well as total cholesterol, triglyceride, High density lipoprotein (HDL -C) and Low density lipoprotein (LDL-C) were measured. As control, 26 persons with other types of gastritis (helicobacter negative), without having diseases such as: diabetes, hyperlipidemia, renal failure, liver diseases, with similar age ranges were chosen. Mean levels of total Cholesterol, triglyceride, LDL-C, ApoB lipoprotein and Lp (a), as well as total Cholesterol/HDL ratio and LDL-C/HDL-C ratio in patients with gastritis resulted by H pylori were significantly increased compared to control groups. In addition HDL-C and Apo- A1 lipoprotein were decreased significantly. Therefore it was possible to conclude that H. pylori infection can cause lipid metabolism disorders that may act as risk factors for cardiovascular diseases.[...] Read More.
Keywords: Gastritis, H. Pylori, lipids, lipoprotein, Apo lipoprotein, Lp (a).
  2015, 14(1), 1-6; 
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Research Article
Huseyin Cakan, Suat Saribas*, Vecdet Oz, Erdal Polat, Mustafa Aslan and Bekir Kocazeybek
Abstract: We performed a four year study to investigate the Visceral Leishmaniasis (VL) cases in, Turkey. Fifty-nine patients with suspected VL from Istanbul were included in this work. Bone marrow and blood samples of these patients were tested for possible VL infection using several methods including serological tests, microscopy, PCR. Nineteen (32.2%) patients had positive results for VL after one or more of the tests performed, while only 7 patients (11.8%) had positive results with all the tests including Giemsa stain. Four (6.8%) patients had negative results based on all the serological tests performed except for positive results with Giemsa stain, culture and PCR. The other 4 (6.8%) patients had positive results with Formol-gel, ELISA IgG (>1.1 ISR) and IFAT IgG, (>1/256) but negative results were obtained with direct microscopic examination, culture and PCR. Using PCR Leishmania infantum DNA was detected in 11(18.6%) of the (Leishmania) cultures originated from the bone marrow samples. Plasmodium vivax was found in 2 (3.4%) patients and leptospira was detected in 1 (1.7%) patient. One (1.7%) patient was diagnosed with Pneumonia (Streptococcus pneumoniae) . Forty (67.8%) patients had negative results after direct microscopic examination, culture, serological tests and PCR. The kappa coefficients = 0.80 = 1.00, = 0.51, = 0.55 and = 0.45 were evaluated for PCR and direct microscopic examination, PCR and culture, PCR and ELISA, PCR and IFAT and PCR and Formol-Gel, as perfect agreement, perfect agreement, moderate agreement and moderate agreement fair moderate, respectively. The probability values (p) for comparisons of all the above tests with PCR showed a significant correlation (p < 0.000) In conclusion, we found that no single method alone was sufficient enough to diagnose VL accurately; however, combined with PCR, all these methods can reveal better and sensitive results ultimately leading to a correct diagnosis. We also suggest that PCR has to be applied with other laboratory diagnostic tests in order to increase the sensitivity in diagnosis and decrease the possible defects in diagnosis.[...] Read More.
Keywords: Visceral leishmaniasis, Leishmania infantum, Turkey.
  2015, 14(1), 1-6; 
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Research Article
Saban Tekin*, Sener Barut, Ahmet Bursali, Gul Aydogan, Onem Yuce, Fatma Demir and Beytullah Yildirim
Abstract: Crimean Congo Haemorrhagic Fever (CCHF) is a fatal viral haemorrhagic fever affecting humans. Serious CCHF outbreaks with high mortality have been reported from Asia, Africa and Europe. Endemic CCHF outbreaks have been seen in Turkey between 2002 and 2009, with about 5% mortality rate. People working with animals, people having tick bites, health workers and relatives of CCHF patients may be infected by CCHF virus and therefore they have been considered as CCHF risk groups. In the present study, CCHF prevalence of a control group, people working with animals (PA), people having tick bites (PT), health workers (HW) and relatives of CCHF patients (RP) from Tokat province in Turkey was investigated. A total of 715 people in control and risk groups were tested for the presence of the anti-CCHF IgG in their sera by using anti-CCHF IgG ELISA and compared. Results showed that people working with animals and relatives of CCHF patients had significantly higher CCHF prevalence (p < 0.001) than other groups. The higher seroprevalence of CCHF in people working with animals and relatives of patients indicate that they might be infected with CCHFV in a way that clinical symptoms of disease did not occur or not apparent in a hyper endemic region.[...] Read More.
Keywords: CCHF, ELISA, human, ticks, Tokat, seroprevalence.
  2015, 14(1), 1-6; 
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Research Article
A. Kavitha, M. Vijayalakshmi*, P. Sudhakar and G. Narasimha
Abstract: 4 different actinomycete strains (A1, A2, A3 and A4) were isolated from the laterite soil samples of Guntur region. Growth pattern and antifungal profiles of the strains were evaluated against the test fungi such as Aspergillus flavus, Aspergillus niger, Candida albicans and Fusarium oxysporum. Based on the cultural, morphological and physiological characteristics, the strains A1, A2 and A4 were identified as the species of Streptomyces while the strain A3 was assigned to Nocardia. Among the 4 tested strains, Streptomyces sp. A1 showed strong antifungal activity which may provide a potent source for antifungal metabolites.[...] Read More.
Keywords: Actinomycetes, Streptomyces, Nocardia, antimicrobial activity.
  2015, 14(1), 1-6; 
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Research Article
Kinuthia Mwangi, Hamadi I. Boga*, Anne W. Muigai, Ciira Kiiyukia and Muniru K. Tsanuo
Abstract: The re-introduction of dichlorodiphenyltrichloroethane (DDT) to control mosquitos was recommended by the World Health Organization in 2007. In this study, the potential for biodegradation of DDT by soil microorganisms through enrichment and isolation of DDT biodegraders from soils without a history of prior exposure to DDT was done. Microorganisms from cultivated and uncultivated soils grew in minimal media with DDT (100 ppm) as the only carbon source. Six bacteria coded as isolates 101, 102, 103, 104, 105 and 110 degraded DDT to l, l-dichloro-2, 2-bis (p-chlorophenyl) ethane (DDD). None of the isolates degraded DDT into l, l- dichloro-2,2-bis (p-chlorophenyl) ethylene (DDE). Degradation by the mixed culture of the six isolates was higher (82.63%) than that of any individual isolates whose range was 28.48 - 58.08%. The identity of the isolates was determined through biochemical, morphological, physiological and molecular techniques. Isolate 101 was a member of the genus Bacillus; isolates 102 and 110 belonged to the genus Staphylococcus while isolates 103, 104 and 105 clustered with members of the genus Stenotrophomonas. This study showed that there are microorganisms in the soil that can degrade DDT and that the rate of degradation is dependent on the presence and numbers of microbes in the soil with the required degradative ability, environmental factors and access of the microbes to DDT.[...] Read More.
Keywords: DDT, biodegradation, bacterial isolates, phylogenetic analysis.
  2015, 14(1), 1-6; 
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Research Article
Udobi Chinweizu Ejikeme* and Onaolapo Josiah Ademola
Abstract: 51 different samples from 5 different manufacturers of ampicillin and ampicillin/cloxacillin suspensions were tested for their levels of active components of ampicillin using the microbiological assay method. Bacillus megathariumNCTC10342A76 was selected from amongst a wide range of organisms screened for this purpose because of its detected suitability. Thin layer chromatography and infra red spectrophotometric analysis confirmed the presence of ampicillin in all the samples and the results obtained showed that the percentage ampicillin content ranged from 57 - 162. Products of MAN-A07 had ampicillin levels less than that recommended by the reference books while one batch from MAN A06 had ampicillin levels higher than the recommended levels. This work is discussed in the context of the proliferation and misuse of ampicillin especially for children.[...] Read More.
Keywords: Microbiological assay, Bacillus megatharium, ampicillin, cloxacillin, chromatography.
  2015, 14(1), 1-6; 
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Research Article
Legesse Garedew, Gelagay Ayelet, Roman Yilma, Aschalew Zeleke and Esayas Gelaye*
Abstract: Bacterial species associated with maedi-visna (MV) infection and occurrence of respiratory disease complex (RDC) in sheep in the cool central highlands of Ethiopia was investigated. Of the 80 sheep examined, 61.25% (n= 49) were found to be MV seropositive and 38.75% (n= 31) were MV seronegative. At post -mortem examination, out of the 49 MV seropositive sheep, 75.51% (n= 37) showed pneumonic lesions in the lungs and a further 23 (74.19%) seronegative sheep were also found pneumonic. Overall, 87.5% (n= 70) of the lungs were culture positive and no bacteria were isolated from 12.5% (n= 10) of the lung samples. The majority of the bacterial species were isolated from grossly pneumonic lungs (75.71%, n= 94) and MV seropositive sheep (62.3%, n= 71). Of the total 114 bacteria isolated, 63 were gram-positive and 51 were gram -negative. Almost all gram -negative isolates (96.08%, n= 49) were recovered from pneumonic lungs. The bacterial isolates were classified into 18 genera and 23 species, some of which are known pathogens and some are opportunists. Involvement of diverse microbial groups in the development of RDC in the study area is discussed.[...] Read More.
Keywords: Diverse bacteria, Ethiopia, maedi-visna, pneumonia, sheep.
  2015, 14(1), 1-6; 
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Research Article
Hassan Momtaz
Abstract: Bovine leukemia virus (BLV) is a member of the family Retroviridae, genus Deltaretrovirus that has three important gene including gag, pol and env. This virus causes B-cell lymphocytosis and lymphosarcoma in cows. In the first step PCR product of gag gene of BLV isolated in different regions of Iran and BLV-FLK strain was cloned into a pTZ57R/T vector, then insert were digested by BglII and XhoI restriction enzymes and cloned into pET-28(a) as an expression vector. Analysis of the partial bovine leukemia virus (BLV) virus gag gene sequences obtained from insert and was carried out. The Iranian BLV gag sequence was compared to five other corresponding sequences of BLV isolated in different countries. Nucleotide analyzing of the sequences were shown a variation of 1 - 8.7% and constructing phylogenetic tree revealed two clusters in it. First cluster included New York, Maryland, Japan and Iranian sample, second cluster included Australian and Argentina strains. Iranian isolates were significantly identical to European and American isolates.[...] Read More.
Keywords: Bovine leukemia virus, p24 protein, pTZ57R/T vector, pET-28(a) vector, phylogenetic analysis.
  2015, 14(1), 1-6; 
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Research Article
Ahmed Oladimeji* and Musa Abdulrasak Kannike
Abstract: The efficacy of neem (Azadirachta indica A. Juss), basil (Ocimum basilicum L.) leaf extracts and lambda-cyhalothrin were compared at three levels of concentration against flea beetle, Podagrica spp. (Jac.) in okra. The leaf extracts were applied at 5, 10 and 20 ml per litre while lambda-cyhalothrin was applied at 2.5, 3.75 and 5.0 ml per litre. Distilled water only served as control. In this study, treatment of okra plant with the synthetic insecticide and the leaf extracts against Podagrica spp. using hand spray significantly suppressed (P < 0.05) insect population, reduced leaf damage and enhanced dry pod yield. The treated okra plants performed significantly better (P < 0.05) than the control. Percentage reduction in leaf damage ranged between 21 - 43% in O. basilicum, 50 - 54% in Azadirachta indica and 72 - 81% in lambda-cyhalothrin compared with the control. There was significant linear negative relationship between dry pod yield and surface area of leaf damaged by the insect (0.001 < P > 0.01).[...] Read More.
Keywords: Botanical insecticide, Azadirachta indica, Ocimum basilicum, synthetic insecticide, Abelmoschus esculentus, flea beetle.
  2015, 14(1), 1-6; 
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Research Article
Ammara Hassan* and Imran Amjad
Abstract: Yoghurt was prepared with two different types of starter cultures that are Lactobacillus bulgaricus and L. acidophilus. In this study 3, 4 and 5% starter cultures were used and stored at 4ºC for 12 days. To analyze the effect of two different cultures and their concentrations on the properties of yoghurt, different physio -chemical tests (protein, lactose, ash, fat, acidity, total solid, pH and moisture) were performed. The results showed that the protein, lactose, ash, fat, acidity and total solid mass were slightly increased while pH and moisture values gradually decreased during storage period of 12 days. The comparative study of starter cultures showed that L. acidophilus produced good quality yoghurt as compared to L. bulgaricus.[...] Read More.
Keywords: Yoghurt, starter cultures, physio-chemical, comparative study of starter cultures.
  2015, 14(1), 1-6; 
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